User: becker.gabriel

Reputation:
10
Status:
New User
Location:
Last seen:
9 months, 3 weeks ago
Joined:
3 years, 1 month ago
Email:
b*************@gene.com

Posts by becker.gabriel

<prev • 8 results • page 1 of 1 • next >
0
votes
3
answers
371
views
3
answers
Answer: A: Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
... Sorry, I misread your question when posting my previous answer, though I'll leave it up in the hopes perhaps it is useful to someone. switchr can also install exact historical versions of packages. Make sure you have switchr version 0.12.9 (currently only available from http://github.com/gmbecker/s ...
written 9 months ago by becker.gabriel10
0
votes
3
answers
371
views
3
answers
Comment: C: Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
... switchr can also install exact, old sets of R packages if that's what you need to do (I don't recommend installing a single historical package version on top of an otherwise modern package library in most cases ). See our paper in JSS https://www.jstatsoft.org/article/view/v082i01 and the package vi ...
written 9 months ago by becker.gabriel10
0
votes
3
answers
371
views
3
answers
Comment: C: Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
... James, You can use switchr to more easily get back to exact package versions if you need to. It has the crawl git/SVN/CRAN webarchive functionality built in so you don't have to worry about it. Best, ~G ...
written 9 months ago by becker.gabriel10
0
votes
3
answers
371
views
3
answers
Answer: A: Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
... Hi all, My switchr package  (on CRAN) has functionality to do this. To create a new switchr library which uses Bioc 3.4, you can do: > library(switchr) > switchTo("bioc3.4test", seed = BiocVers("3.4")) trying URL 'https://bioconductor.org/packages/3.4/bioc/src/contrib/BiocInstaller_1.24.0.t ...
written 9 months ago by becker.gabriel10
0
votes
1
answer
447
views
1
answers
Answer: A: ReportingTools Segmentation fault
... This is strange. ReportingTools does not have any C or C++ code in it at all, so it is difficult to imagine the segfault being due to our code. I'm also not able to reproduce this when installing from source on OS X El Capitan in R 3.4.4 patched.  I will try to look into this more but I'm not sure ...
written 13 months ago by becker.gabriel10
0
votes
1
answer
282
views
1
answers
Answer: A: genbankr fails when reading GBK file
... Monther, Apologies for not responding sooner. I'm not familiar with this error. I haven't seen it before. Can you provide me the gbk file in question so I can do some debugging? Thanks, ~G ...
written 13 months ago by becker.gabriel10
0
votes
1
answer
220
views
1
answers
Answer: A: problem with genbankr
... Hi, Sorry for the delay getting back to you. The issue here was not a bug in genbankr, per se, but rather a but introduced in a new version of the underlying rentrez package. This has now been fixed in both release and devel and you should no longer get this error. Best, ~G ...
written 13 months ago by becker.gabriel10
1
vote
1
answer
510
views
1
answers
Answer: A: Importing genbank entries for synthetic constructs
... Thomas, Thanks for the report. Ideally, genbankr is intended to support anything (reasonable) provided in the GenBank (or GenPept) format. I will look into this and should be able to get it fixed.  I will comment again when there is news. Best, ~G ...
written 2.4 years ago by becker.gabriel10

Latest awards to becker.gabriel

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 106 users visited in the last hour