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Comment: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
We have some text about this particular question in the Frequently Asked Questions (FAQ) part of the software vignette.
Answer: How to run allelic imbalance in apeglm
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Michael Love
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You can put 1 / 1 for the ratio when you are missing counts and then set the weight for that matrix cell to 1e-6.
Let me know if that's …
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
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0
Got you. Thanks again for your comments.
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
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Thanks so much for your comment. Yes, this makes sense to me, especially since the effect of the drug is subtle. But it raises a larger con…
Answer: ERROR; return code from pthread_create() is 22
by
James W. MacDonald
65k
Seems OK to me.
```
> dat <- ReadAffy()
> dat
AffyBatch object
size of arrays=744x744 features (20 kb)
cdf=HG-U219 (49386 affyids)
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