Showing : DEGseq • reset
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594
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limma fo continous variables
limma DEGseq
updated 12 weeks ago by 65k • written 12 weeks ago by • 0
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1
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534
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Why was the number of DEG different between DESeq results and count by myself using excel?
RNASeqData DEGseq
updated 9 months ago by ★ 4.1k • written 9 months ago by • 0
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2
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586
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RNA seq differential expression analysis
DEGseq RNASeqData limma
updated 11 months ago by 50k • written 11 months ago by • 0
2
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5
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1.2k
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Create the design matrix
DEGseq edgeR RNASeq
16 months ago Mohammad • 0
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865
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Extracting gene lists per timepoints using DEGPPatterns package and LRT
DEGseq clusterProfiler DEGreport
18 months ago Rob • 0
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2
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736
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RNA-Seq Reads Count
DESeq2 htseq DEGseq RNASeq read
updated 18 months ago by 42k • written 19 months ago by • 0
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2
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943
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Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression GeneExpression R enrichment DEGseq
updated 22 months ago by ★ 1.4k • written 22 months ago by • 0
1
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4
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945
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How to figure out the FC value from Limma
limma DEGseq DifferentialExpression
updated 24 months ago by ★ 3.9k • written 24 months ago by • 0
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1
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880
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R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar DEGseq MicroarrayData
updated 2.5 years ago by 65k • written 2.5 years ago by • 0
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1
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705
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Meta analysis
DEGseq Metanalysis
updated 2.6 years ago by ★ 3.9k • written 2.6 years ago by • 0
1
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2
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828
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DESeq2 desing formula for cell fraction and siRNA scramble
DEGseq DESeq2 Designformula
updated 3.0 years ago by ★ 1.4k • written 3.0 years ago by • 0
1
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7
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1.4k
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how to make a contrast of uniquely DE genes
edgeR limma RNA-seq DEGseq
3.2 years ago decppced • 0
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3
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1.1k
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DeSeq2- design experiment
rnaseq degseq
6.6 years ago laksharikrish • 0
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1
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1.2k
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Problem with DEGseq/samWrapper
degseq
updated 7.0 years ago by • 0 • written 9.5 years ago by ▴ 30
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923
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Regarding q-value
DEGseq DEGseq
10.9 years ago deepika lakhwani ▴ 170
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1
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1.4k
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Problems in running easyRNASeq
Annotation Organism DEGseq easyRNASeq Annotation Organism DEGseq easyRNASeq
updated 11.3 years ago by ★ 1.2k • written 11.3 years ago by ★ 13k
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3
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1.4k
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Analysis of public GEO datasets - NGS
DEGseq DEGseq
updated 11.7 years ago by ▴ 350 • written 11.7 years ago by ★ 13k
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NGS public data analysis
Transcription DEGseq Transcription DEGseq
11.7 years ago Jill Pleasance ▴ 10
0
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1
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4.1k
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RNA-seq analysis and two-way ANOVAs
edgeR baySeq DEGseq DESeq DEXSeq edgeR baySeq DEGseq DESeq DEXSeq
updated 11.7 years ago by 50k • written 11.7 years ago by ▴ 150
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3
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1.2k
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Help with plot comparison
baySeq DEGseq baySeq DEGseq
12.2 years ago Tina Asante Boahene ▴ 100
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1.1k
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DEGseq help
baySeq DEGseq baySeq DEGseq
12.3 years ago Tina Asante Boahene ▴ 100
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1.2k
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FDR (False Discovery Rate)
baySeq DEGseq baySeq DEGseq
12.3 years ago Tina Asante Boahene ▴ 100
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955
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A question on baySeq
Normalization DEGseq DESeq Normalization DEGseq DESeq
13.8 years ago sunghee OH ▴ 50
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1
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1.1k
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A question on DESeq
edgeR DEGseq DESeq edgeR DEGseq DESeq
updated 13.8 years ago by ★ 3.7k • written 13.8 years ago by ▴ 50
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8
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2.0k
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Experimental design for RNA-Seq
edgeR DEGseq DESeq edgeR DEGseq DESeq
updated 14.0 years ago by ★ 6.0k • written 14.0 years ago by ★ 3.4k
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3
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1.7k
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New package to identify differentially expressed genes from RNA-seq data
Annotation DEGseq Annotation DEGseq
updated 14.6 years ago by ▴ 110 • written 14.6 years ago by ★ 6.0k
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New package to identify differentially expressed genes from RNA-seq data
Annotation DEGseq Annotation DEGseq
14.6 years ago Likun Wang ▴ 50
27 results • Page 1 of 1
Recent ...
Replies
Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 65k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat by James W. MacDonald 65k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 65k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat by minardsmitha ▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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