Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
DEGseq
•
reset
2
votes
5
replies
1.2k
views
Create the design matrix
DEGseq
edgeR
RNASeq
16 months ago
Mohammad
• 0
1
vote
4
replies
946
views
How to figure out the FC value from Limma
limma
DEGseq
DifferentialExpression
updated 24 months ago by
Kevin Blighe
★ 3.9k • written 24 months ago by
beslinail
• 0
1
vote
7
replies
1.4k
views
how to make a contrast of uniquely DE genes
edgeR
limma
RNA-seq
DEGseq
3.2 years ago
decppced
• 0
1
vote
2
replies
828
views
DESeq2 desing formula for cell fraction and siRNA scramble
DEGseq
DESeq2
Designformula
updated 3.0 years ago by
swbarnes2
★ 1.4k • written 3.0 years ago by
Nicolò
• 0
0
votes
0
replies
955
views
A question on baySeq
Normalization
DEGseq
DESeq
Normalization
DEGseq
DESeq
13.8 years ago
sunghee OH
▴ 50
0
votes
3
replies
1.2k
views
Help with plot comparison
baySeq
DEGseq
baySeq
DEGseq
12.2 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.2k
views
FDR (False Discovery Rate)
baySeq
DEGseq
baySeq
DEGseq
12.3 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.1k
views
DEGseq help
baySeq
DEGseq
baySeq
DEGseq
12.3 years ago
Tina Asante Boahene
▴ 100
0
votes
1
reply
4.1k
views
RNA-seq analysis and two-way ANOVAs
edgeR
baySeq
DEGseq
DESeq
DEXSeq
edgeR
baySeq
DEGseq
DESeq
DEXSeq
updated 11.7 years ago by
Gordon Smyth
50k • written 11.7 years ago by
Elena Sorokin
▴ 150
0
votes
0
replies
1.3k
views
NGS public data analysis
Transcription
DEGseq
Transcription
DEGseq
11.7 years ago
Jill Pleasance
▴ 10
0
votes
3
replies
1.4k
views
Analysis of public GEO datasets - NGS
DEGseq
DEGseq
updated 11.7 years ago by
Aliaksei Holik
▴ 350 • written 11.7 years ago by
Guest User
★ 13k
0
votes
1
reply
1.4k
views
Problems in running easyRNASeq
Annotation
Organism
DEGseq
easyRNASeq
Annotation
Organism
DEGseq
easyRNASeq
updated 11.3 years ago by
delhomme@embl.de
★ 1.2k • written 11.3 years ago by
Guest User
★ 13k
0
votes
0
replies
923
views
Regarding q-value
DEGseq
DEGseq
10.9 years ago
deepika lakhwani
▴ 170
0
votes
0
replies
1.1k
views
New package to identify differentially expressed genes from RNA-seq data
Annotation
DEGseq
Annotation
DEGseq
14.6 years ago
Likun Wang
▴ 50
0
votes
3
replies
1.1k
views
DeSeq2- design experiment
rnaseq
degseq
6.6 years ago
laksharikrish
• 0
0
votes
2
replies
943
views
Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression
GeneExpression
R
enrichment
DEGseq
updated 22 months ago by
swbarnes2
★ 1.4k • written 22 months ago by
ac.mainul.mmb
• 0
0
votes
9
replies
594
views
limma fo continous variables
limma
DEGseq
updated 12 weeks ago by
James W. MacDonald
65k • written 12 weeks ago by
mia
• 0
0
votes
1
reply
705
views
Meta analysis
DEGseq
Metanalysis
updated 2.6 years ago by
Kevin Blighe
★ 3.9k • written 2.6 years ago by
biomyscience
• 0
0
votes
1
reply
880
views
R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar
DEGseq
MicroarrayData
updated 2.5 years ago by
James W. MacDonald
65k • written 2.5 years ago by
biomyscience
• 0
0
votes
2
replies
736
views
RNA-Seq Reads Count
DESeq2
htseq
DEGseq
RNASeq
read
updated 18 months ago by
Michael Love
42k • written 19 months ago by
CP
• 0
0
votes
2
replies
587
views
RNA seq differential expression analysis
DEGseq
RNASeqData
limma
updated 11 months ago by
Gordon Smyth
50k • written 11 months ago by
Shaimaa Gamal
• 0
0
votes
0
replies
866
views
Extracting gene lists per timepoints using DEGPPatterns package and LRT
DEGseq
clusterProfiler
DEGreport
18 months ago
Rob
• 0
0
votes
1
reply
534
views
Why was the number of DEG different between DESeq results and count by myself using excel?
RNASeqData
DEGseq
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
sybyun419
• 0
0
votes
1
reply
1.2k
views
Problem with DEGseq/samWrapper
degseq
updated 7.0 years ago by
ab.tsubaki
• 0 • written 9.5 years ago by
jovel_juan
▴ 30
0
votes
3
replies
1.7k
views
New package to identify differentially expressed genes from RNA-seq data
Annotation
DEGseq
Annotation
DEGseq
updated 14.6 years ago by
Ulrike Goebel
▴ 110 • written 14.6 years ago by
Naomi Altman
★ 6.0k
0
votes
8
replies
2.0k
views
Experimental design for RNA-Seq
edgeR
DEGseq
DESeq
edgeR
DEGseq
DESeq
updated 14.0 years ago by
Naomi Altman
★ 6.0k • written 14.0 years ago by
michael watson IAH-C
★ 3.4k
0
votes
1
reply
1.1k
views
A question on DESeq
edgeR
DEGseq
DESeq
edgeR
DEGseq
DESeq
updated 13.8 years ago by
Simon Anders
★ 3.7k • written 13.8 years ago by
sunghee OH
▴ 50
27 results • Page
1 of 1
Recent ...
Replies
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
65k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
65k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
65k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat
by
minardsmitha
▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons
by
boczniak767
▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Awards
• All
Popular Question
to
landenshanie
▴ 40
Popular Question
to
minardsmitha
▴ 10
Teacher
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
Mike
• -60
Popular Question
to
shepherl
3.9k
Locations
• All
Ireland,
17 minutes ago
United States,
20 minutes ago
United States,
22 minutes ago
United States,
23 minutes ago
United States,
33 minutes ago
Traffic: 628 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6