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Answer: Normalisation using clinical traits in RNA seq using DESeq2
by
ATpoint
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See the vignette, it's a FAQ: https://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#why-after-vst-are-there-st…
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Ian D.
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Please could you comment on this @rory
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
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Wei Shi
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Your bam file names should be stored in a vector and then provided to the `files` parameter.
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Agree with @atpoint
Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…
Answer: Volcano plot of scRNA-seq data not "centered"
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ATpoint
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Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…
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