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Foldchange
•
reset
1
vote
2
replies
506
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod
FoldChange
edgeR
RNASeq
5 months ago
Sabiha
▴ 20
1
vote
1
reply
2.4k
views
Question regarding lfcShrink types in DiffBind
FoldChange
DiffBind
lfcShrink
updated 10 months ago by
Rory Stark
★ 5.2k • written 10 months ago by
bhandary.8590
▴ 20
4
votes
4
replies
858
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange
DiffBind
lfcShrink
Cut&TagData
11 months ago
bhandary.8590
▴ 20
0
votes
2
replies
1.6k
views
DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2
TPM
Foldchange
updated 2.1 years ago by
Michael Love
42k • written 2.1 years ago by
dadca596
• 0
0
votes
1
reply
918
views
First time Statistical Analysis of RNA-seq
edgeR
RNA-Seq
log2
foldchange
q_value
updated 2.4 years ago by
Gordon Smyth
50k • written 2.4 years ago by
johndavidgriner74
• 0
0
votes
2
replies
1.2k
views
sigh of log2FC values in DESeq2
sign
FoldChange
DESeq2
reference
updated 2.4 years ago by
Michael Love
42k • written 2.4 years ago by
yampolsk
• 0
3
votes
5
replies
4.9k
views
How does edgeR calculate fold change?
DifferentialExpression
DEA
FC
FoldChange
edgeR
2.7 years ago
zhxiaokang
▴ 20
2
votes
9
replies
2.4k
views
extract fold change of a list of gene from EdgeR?
EdgeR
RNAseq
Foldchange
updated 2.9 years ago by
swbarnes2
★ 1.4k • written 2.9 years ago by
najib
• 0
0
votes
7
replies
2.4k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange
topGO
DifferentialExpression
enrichment
updated 3.5 years ago by
Gordon Smyth
50k • written 3.5 years ago by
lessismore
▴ 20
4
votes
5
replies
1.4k
views
All genes display positive fold change in topTable results after limma
limma
microarray
foldchange
DEG
GEO
updated 4.3 years ago by
Gordon Smyth
50k • written 4.3 years ago by
Pietro
▴ 40
1
vote
1
reply
1.4k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 5.1 years ago by
Michael Love
42k • written 5.4 years ago by
fiona.dick91
▴ 60
5
votes
4
replies
1.4k
views
Foldchange values Limma
limma
RNAseq
foldchange
5.2 years ago
susana.amaral.teixeira
▴ 20
12 results • Page
1 of 1
Recent ...
Replies
Comment: conumee with Infinium MethylationEPIC v2.0
by
Maximus
• 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
• 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Answer: GSVA function
by
Robert Castelo
★ 3.3k
Hi, We recommend to input normalized expression values in logarithmic scale to GSVA. We also recommend to use the latest release of the …
Votes
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DESeq2: add annotations (from data frame) to DESeqDataSet
Add new columns to DESeqResults from text file by matching rownames.
DESeq2: LRT or WALD guidance
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Robert Castelo
★ 3.3k
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kevin.rue
▴ 350
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to
Wei Shi
★ 3.6k
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to
Gordon Smyth
50k
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to
jovel_juan
▴ 30
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