Showing : GO.db • reset
2
votes
5
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258
views
How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 23 days ago by 65k • written 24 days ago by • 0
2
votes
17
replies
1.1k
views
Problem installing package, version of dependency issue
AnnotationDbi GO.db
updated 4 months ago by ▴ 730 • written 4 months ago by ▴ 50
0
votes
8
replies
755
views
GOslim missing GO term
GO.db GOslim
5 months ago amanda • 0
0
votes
1
reply
401
views
Which species does GO.db use
GO.db annotationTools
updated 9 months ago by ▴ 730 • written 9 months ago by • 0
0
votes
0
replies
403
views
plotGOTermGraph connects all subtrees to the root node
GO.db GOstats
11 months ago RuBBiT0 ▴ 10
1
vote
0
replies
384
views
Typo in GO.db manual reference
GO.db
13 months ago RuBBiT0 ▴ 10
1
vote
2
replies
927
views
GO.db for Bioconductor 3.17
GO.db devel
15 months ago Amanda D. Clark • 0
0
votes
2
replies
1.6k
views
Can't install GO.db
GOexpress GO.db GOSemSim
18 months ago Chruut • 0
0
votes
1
reply
697
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 19 months ago by ▴ 780 • written 19 months ago by • 0
1
vote
1
reply
2.0k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler GO.db
23 months ago Lucía ▴ 10
1
vote
6
replies
1.2k
views
Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db versioning
updated 2.4 years ago by 65k • written 2.4 years ago by • 0
0
votes
1
reply
2.3k
views
how to sort y-axis category of GO result
GO.db clusterProfiler dotplot barplot
2.6 years ago Yang • 0
0
votes
1
reply
929
views
How to use GO.db select on *ANCESTOR *CHILDREN *PARENTS etc.
GO.db
updated 2.6 years ago by 65k • written 2.6 years ago by • 0
1
vote
6
replies
1.9k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 2.7 years ago by • 0 • written 2.7 years ago by ▴ 40
0
votes
1
reply
968
views
ViSEAGO
gene_ontology GOID ViSEAGO GO.db custom2GO
2.8 years ago jabbar_campbell • 0
2
votes
2
replies
1.0k
views
retrieve gene IDs from GO.db GO
GO GO.db
3.0 years ago decppced • 0
1
vote
2
replies
912
views
Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
3.2 years ago MOHAMMAD • 0
2
votes
1
reply
929
views
Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 3.2 years ago by ▴ 780 • written 3.2 years ago by • 0
3
votes
2
replies
2.0k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db AnnotationDbi
updated 3.3 years ago by 25k • written 3.3 years ago by ★ 4.0k
0
votes
4
replies
1.4k
views
GO.db package can't be installed
install GO.db
updated 3.4 years ago by 25k • written 3.4 years ago by • 0
1
vote
1
reply
1.4k
views
installing GO.bd for WGCNA
GO.db WGCNA
updated 3.4 years ago by 65k • written 3.4 years ago by • 0
0
votes
4
replies
1.1k
views
topGO "argument is of length zero" error
GO.db topGO
updated 3.5 years ago by 65k • written 3.6 years ago by • 0
0
votes
2
replies
1.4k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 3.8 years ago by 65k • written 3.8 years ago by ★ 2.0k
0
votes
1
reply
1.7k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
4.0 years ago Jenny Drnevich ★ 2.0k
1
vote
2
replies
1.4k
views
Help installing clusterProfiler
clusterProfiler DO.db GO.db lazy load fail
updated 4.0 years ago by 65k • written 4.0 years ago by • 0
0
votes
4
replies
1.4k
views
Error attaching TIN
software error GO.db TIN
updated 4.0 years ago by 25k • written 4.0 years ago by • 0
1
vote
2
replies
732
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 4.1 years ago by 65k • written 4.1 years ago by • 0
1
vote
4
replies
1.1k
views
Trouble installing package GO.db
GO.db
updated 4.4 years ago by 65k • written 4.4 years ago by • 0
0
votes
1
reply
1.2k
views
package 'hgu95av2.db' is not available (for R version 3.6.0)
Go.db hgu95av2.db R3.6.0
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
0
votes
5
replies
4.1k
views
Cannot install GO.db for R 3.6.1
GO.db R 3.6.1 source package
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
2
votes
5
replies
996
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 4.9 years ago by 65k • written 4.9 years ago by • 0
0
votes
5
replies
1.5k
views
hyperGTest not working on custom annotation package
GOstats AnnotationDbi GO.db
updated 5.2 years ago by 65k • written 5.2 years ago by • 0
1
vote
2
replies
1.4k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db clusterprofiler
updated 5.5 years ago by 25k • written 5.5 years ago by ★ 1.0k
3
votes
3
replies
1.1k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 5.7 years ago by • 0 • written 5.7 years ago by ▴ 10
1
vote
1
reply
1.1k
views
GO.db: searching for "top" GO term for list of terms
GO go.db
updated 5.8 years ago by 65k • written 5.8 years ago by • 0
2
votes
2
replies
1.4k
views
GO.db source obo file?
gene ontology gostats go.db ontologies
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
2
votes
2
replies
983
views
Troubles installing GO.db
go.db
updated 6.0 years ago by 25k • written 6.0 years ago by ▴ 20
3
votes
8
replies
2.5k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 6.0 years ago by 25k • written 6.0 years ago by ▴ 10
0
votes
1
reply
1.7k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 6.2 years ago by ★ 1.3k • written 6.2 years ago by • 0
0
votes
0
replies
1.2k
views
GOstats install Error : .onLoad failed in loadNamespace() for 'GO.db'
gostats go.db
6.2 years ago crafy • 0
0
votes
3
replies
1.2k
views
How to annotate gene ontologies based on Gene Symbols in R
GO.db annotate
6.2 years ago dusan.petrovic • 0
0
votes
1
reply
2.4k
views
GO.db failure to install
software error go.db
6.3 years ago matt.a.bennett25890 • 0
0
votes
1
reply
1.5k
views
GO.db, pfma.db, KEGG.db
pfam go.db kegg.db
updated 6.7 years ago by 25k • written 6.7 years ago by • 0
0
votes
1
reply
2.0k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 6.7 years ago by 25k • written 6.7 years ago by • 0
1
vote
10
replies
2.7k
views
Error installing Annaffy
affy annaffy go.db kegg.db
updated 7.1 years ago by 65k • written 7.1 years ago by • 0
0
votes
3
replies
4.0k
views
ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db'
bioconductor R go.db annotationdbi dependency
7.2 years ago Sidi.Ma • 0
0
votes
2
replies
1.5k
views
GO.db will not download
GO.db
7.2 years ago MOD • 0
0
votes
1
reply
1.8k
views
Windows fails to install package from source 'tar.gz', e.g., "GO.db"
go.db WGCNA
updated 7.2 years ago by 25k • written 7.2 years ago by ▴ 10
1
vote
5
replies
5.4k
views
can not able to install go.db
go.db
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
0
votes
1
reply
1.1k
views
I cannot install the package GO.db
GO.db
7.5 years ago chisad • 0
50 results • Page 1 of 1
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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