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NanoStringDiff
•
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0
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0
replies
866
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fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
11 months ago
pg45863
▴ 10
0
votes
2
replies
874
views
Nanostring data differential expression analysis: limma or DESeq2?
DESeq2
NanoStringDiff
limma
12 months ago
pg45863
▴ 10
0
votes
1
reply
647
views
Micro Array GEO data analysis
GEOquery
MicroarrayData
Normalization
Microarray
NanoStringDiff
updated 15 months ago by
James W. MacDonald
65k • written 15 months ago by
Aleksandra
• 0
0
votes
2
replies
519
views
NanoStringDiff contrast vectors
NanoStringDiff
updated 17 months ago by
James W. MacDonald
65k • written 17 months ago by
Paraskevi
• 0
0
votes
0
replies
557
views
NanoStringDiff
DifferentialExpression
NanoStringDiff
2.4 years ago
sanrie10
• 0
5
votes
7
replies
1.5k
views
Nanostringdiff - defining contrast values for blocking variables in glm
limma
edgeR
DESeq2
NanoStringDiff
updated 2.7 years ago by
James W. MacDonald
65k • written 2.7 years ago by
reberya
• 0
3
votes
2
replies
992
views
R NanoStringDiff: DE analysis, from 2 group comparison method how "logFC" generated?
Nan
NanoStringDiff
2.9 years ago
choijamts
• 0
3
votes
6
replies
1.9k
views
Why NanoStringDiff package so slow?
NanoStringDiff
NanoString
nCounter
DE analysis
updated 6 months ago by
georgersmith
• 0 • written 4.8 years ago by
lim6432
▴ 50
0
votes
0
replies
669
views
NanoStringDiff - housekeeping genes variation
NanoStringDiff
3.2 years ago
YM
• 0
1
vote
1
reply
917
views
NanoStringDiff Not Recognized as Numeric
Bioconductor
Transcriptomics
NanoStringDiff
updated 3.6 years ago by
Laurent Gatto
1.6k • written 3.6 years ago by
Pedro
▴ 10
1
vote
7
replies
1.1k
views
NanoStringDiff glm.LRT not finishing after 20 hours
NanoStringDiff
4.3 years ago
stephen.pollo
• 0
0
votes
2
replies
882
views
NanoStringDiff correction for variation between patient
NanoStringDiff
GLM
Gene expression
updated 4.7 years ago by
James W. MacDonald
65k • written 4.7 years ago by
Guillaume Robert
• 0
3
votes
3
replies
1.5k
views
NanoStringDiff counts not numeric
NanoStringDiff
updated 3 months ago by
pjanas
• 0 • written 5.0 years ago by
noelleenright
▴ 10
1
vote
6
replies
2.0k
views
How to access normalized data in the NanoStringDiff package?
nanostringdiff
nanostring
NanoStringDiff
updated 5.9 years ago by
James W. MacDonald
65k • written 6.0 years ago by
casey.rimland
▴ 150
0
votes
0
replies
1.4k
views
design matrix and contrast for paired experiment using NanoStringDiff for nCounter data
nanostring
NanoStringDiff
design and contrast matrix
differential gene expression
ncounter
6.8 years ago
c.kohler
• 0
15 results • Page
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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