Bioconductor NanoStringDiff

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829

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NanoStringDiff clusterProfiler fgsea

11 months ago pg45863 ▴ 10

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851

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DESeq2 NanoStringDiff limma

11 months ago pg45863 ▴ 10

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631

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GEOquery MicroarrayData Normalization Microarray NanoStringDiff

updated 15 months ago by James W. MacDonald 65k • written 15 months ago by Aleksandra • 0

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512

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NanoStringDiff

updated 16 months ago by James W. MacDonald 65k • written 16 months ago by Paraskevi • 0

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550

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DifferentialExpression NanoStringDiff

2.4 years ago sanrie10 • 0

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1.5k

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limma edgeR DESeq2 NanoStringDiff

updated 2.6 years ago by James W. MacDonald 65k • written 2.7 years ago by reberya • 0

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975

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Nan NanoStringDiff

2.8 years ago choijamts • 0

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1.9k

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NanoStringDiff NanoString nCounter DE analysis

updated 6 months ago by georgersmith • 0 • written 4.7 years ago by lim6432 ▴ 50

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660

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NanoStringDiff

3.1 years ago YM • 0

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903

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Bioconductor Transcriptomics NanoStringDiff

updated 3.5 years ago by Laurent Gatto 1.6k • written 3.5 years ago by Pedro ▴ 10

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1.1k

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NanoStringDiff

4.3 years ago stephen.pollo • 0

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872

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NanoStringDiff GLM Gene expression

updated 4.7 years ago by James W. MacDonald 65k • written 4.7 years ago by Guillaume Robert • 0

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1.4k

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NanoStringDiff

updated 3 months ago by pjanas • 0 • written 5.0 years ago by noelleenright ▴ 10

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1.9k

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nanostringdiff nanostring NanoStringDiff

updated 5.9 years ago by James W. MacDonald 65k • written 5.9 years ago by casey.rimland ▴ 150

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1.3k

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

6.8 years ago c.kohler • 0

15 results • Page 1 of 1

Recent ...

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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…

Answer: Once again a "Model matrix not full rank" by James W. MacDonald 65k

The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …

Answer: DESeq2 v1.35.0 by Michael Love 41k

That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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