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Outliers
•
reset
8
votes
17
replies
15k
views
WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
WGCNA
Sample Size
Outliers
updated 8.7 years ago by
mh.manoj
• 0 • written 9.3 years ago by
brohawndg
▴ 150
0
votes
10
replies
17k
views
Differential expression due to extreme outliers in DESeq2
deseq2
outliers
6.4 years ago
paul.alto
▴ 50
0
votes
9
replies
1.7k
views
DESeq2 influence of 2 samples
deseq2
outliers
differential gene expression
updated 7.3 years ago by
Michael Love
42k • written 7.3 years ago by
gregory.l.stone
▴ 10
7
votes
8
replies
2.1k
views
Cook's Distance Outliers: None reported in results table and "cooksCutoff" modification has no effect
deseq2
outliers
cooks
cooks distance
updated 3.8 years ago by
Michael Love
42k • written 3.8 years ago by
donnenfieldjonah
• 0
1
vote
8
replies
3.1k
views
[DESeq2] Automatic outlier detection and replacement with continuous variables
deseq2
outliers
RNAseq
differential gene expression
7.2 years ago
cajawe
• 0
1
vote
7
replies
1.8k
views
skewed differentially expressed gene results - DESeq2
deseq2
differential gene expression
outliers
updated 5.8 years ago by
Ryan C. Thompson
★ 7.9k • written 5.8 years ago by
CE
▴ 20
0
votes
7
replies
3.6k
views
Deciding on cooks cutoff value DESeq2
deseq2
differential gene expression
outliers
bioconductor
updated 7.3 years ago by
Michael Love
42k • written 7.3 years ago by
gregory.l.stone
▴ 10
0
votes
6
replies
1.5k
views
weird behaviour DESeq2 1.18.1
deseq2
outliers
version
updated 6.2 years ago by
Michael Love
42k • written 6.2 years ago by
aec
▴ 90
0
votes
4
replies
1.4k
views
significant genes with DESeq2 plenty of outliers and zero counts
zero counts
deseq2
odd results
outliers
updated 6.3 years ago by
Michael Love
42k • written 6.3 years ago by
aec
▴ 90
0
votes
4
replies
2.4k
views
DESeq2, outlier correction, Combat, NMF
deseq2
combat
outliers
NMF
updated 7.0 years ago by
Michael Love
42k • written 7.0 years ago by
noname
• 0
1
vote
3
replies
5.2k
views
DESeq2: How to manually perform filtering and outlier detection?
deseq2
filtering
outliers
count outliers
updated 6.8 years ago by
Wolfgang Huber
★ 13k • written 6.8 years ago by
heikki.sarin
▴ 10
0
votes
3
replies
1.1k
views
DESeq outlier detection for unbalanced groups
deseq2
deseq
outliers
updated 7.8 years ago by
Michael Love
42k • written 7.8 years ago by
akaever
▴ 30
3
votes
3
replies
1.6k
views
How to define an outlier array from PCA?
microarray
PCA
outliers
sample outliers
limma
updated 8.3 years ago by
Aaron Lun
★ 28k • written 8.3 years ago by
serpalma.v
▴ 60
2
votes
3
replies
1.9k
views
DESeq2 count outlier replacement from Cook's threshold
deseq2
deseq
rnaseq
outliers
count outliers
updated 5.5 years ago by
Michael Love
42k • written 5.5 years ago by
lefeverde
▴ 10
0
votes
3
replies
1.0k
views
dealing with outliers (deseq2)
maxcooks
outliers
zero
counts
DESeq2
updated 2.2 years ago by
Michael Love
42k • written 2.2 years ago by
andreia
▴ 10
1
vote
2
replies
1.1k
views
Odd Sample after SWAN normalisation, DNA methylation analysis EPIC array
minfi
normalization
outliers
dna methylation
densityplot
5.8 years ago
peter.fransquet
• 0
0
votes
2
replies
752
views
Outliers
outliers
Deseq2
3.1 years ago
nolwenn
• 0
8
votes
2
replies
7.1k
views
handling outliers with DESeq2
RNASeqData
DESeq2
Outliers
3.1 years ago
paty
▴ 60
1
vote
2
replies
1.1k
views
rlog vs vst for outlier identification
rlog
DESeq2
vst
outliers
2.4 years ago
Bex
• 0
0
votes
1
reply
867
views
Removal of outliers after library size correction, can I save this to my dds object?
deseq2
outliers
updated 6.2 years ago by
Michael Love
42k • written 6.2 years ago by
Moose123
• 0
0
votes
1
reply
1.3k
views
Handling outliers in Deseq2
outliers
deseq2
logfoldchange
6.3 years ago
lirongrossmann
▴ 80
0
votes
1
reply
1.4k
views
Deseq2 default Cooks distance threshold
Deseq2
outliers
cookscutoff
updated 5.8 years ago by
Michael Love
42k • written 5.8 years ago by
jaime.alvarez.benayas
• 0
1
vote
1
reply
1.4k
views
Outliers - to remove or to not remove that is the question
outliers
rna
microarray
updated 7.0 years ago by
chris86
▴ 420 • written 7.0 years ago by
bhgyu
▴ 30
0
votes
1
reply
650
views
Which samples to remove from analysis based on Cook's distance outliers plot
DESeq2
cooks
outliers
updated 14 months ago by
ATpoint
★ 4.2k • written 14 months ago by
Michael
• 0
0
votes
0
replies
2.2k
views
Modeling count data that is zero inflated with negative binomial hurdle regression
pscl
outliers
updated 9.2 years ago by
Sean Davis
21k • written 9.2 years ago by
mrk.carty
▴ 30
25 results • Page
1 of 1
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Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
• 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Answer: GSVA function
by
Robert Castelo
★ 3.3k
Hi, We recommend to input normalized expression values in logarithmic scale to GSVA. We also recommend to use the latest release of the …
Comment: Cannot install oligo on Fedora
by
Guido Hooiveld
★ 4.0k
Aha, that is a good one! Starting from release 40, as I just found out, Fedora apparently is not including/using `zlib` as such anymore, b…
Votes
Answer: How to run allelic imbalance in apeglm
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
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