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TnSeq as ZINB? Alternatives in R?
DESeq2 R edgeR Python TnSeq
updated 17 months ago by • 0 • written 18 months ago by ▴ 90
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Job: Bioconductor Core developers group opening
R cloud github python git
20 months ago Vincent J. Carey, Jr. 6.7k
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Change the interval of bed file
mappability bed python
updated 2.3 years ago by 65k • written 2.3 years ago by • 0
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python and R
snpeff python tophat r RNAseq123
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Job: Senior Data Engineer | Poland | remote
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3.0 years ago Ewa • 0
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq python gtf gff3 annotation
4.0 years ago Raito92 ▴ 60
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Load data with rhdf5
rhdf5 python
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 4.7 years ago by ▴ 30 • written 4.7 years ago by ▴ 10
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4.7 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
5.1 years ago Shamith.Samarajiwa ▴ 180
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bioinformatics scientist python computational Job
5.3 years ago careers • 0
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Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
bioinformatician job rna-seq chipseq gsea python Job
5.8 years ago l.brown ▴ 10
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Python functionality feature request
python bioconductor
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
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Job: Bioinformatics Engineer / Data Analyst
python bio ngs linux Job
6.2 years ago EMBL Recruitment • 0
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Job: Full-time bioinformatics instructor position at Fred Hutch
R shell Python SQL Job
6.3 years ago ematsen ▴ 20
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Job: Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
R python deep learning machine learning cancer genomics Job
7.1 years ago Shamith.Samarajiwa ▴ 180
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Job: Data Scientist / Bioinformatician / Statistician at University of California
R python stats bioinformatics perl Job
7.8 years ago clif.duhn • 0
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Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
R bioinformatician job Perl Python statistics Job
8.1 years ago • updated 7.8 years ago clif.duhn • 0
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Job: Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics data science python SQL Job
8.3 years ago Doe, Aimee ▴ 40
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Convertion of indexed bam file to tsv file format
python samtools
updated 8.6 years ago by 16k • written 8.6 years ago by • 0
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DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq splicing python SAM
8.6 years ago Fiona ▴ 70
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seq2pathway error on Mac OS X
seq2pathway error python mac os x
8.7 years ago termanini ▴ 10
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Job: Calling all Clinical Genomic Scientist
computational biology genomics genetics Python java Job
8.9 years ago careers • 0
23 results • Page 1 of 1
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Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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