Bioconductor QualityControl

Showing : QualityControl • reset

votes

replies

954

views

QualityControl methylationArrayAnalysis

2.3 years ago zusman • 0

votes

1.0k

views

QualityControl Alignment QuasR

updated 3.3 years ago by Michael Stadler ▴ 350 • written 3.3 years ago by h.kozlowski • 0

votes

replies

615

views

folder quality QualityControl AffyExpress

3.4 years ago bastien_chassagnol • 0

votes

replies

1.4k

views

qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 6.7 years ago by James W. MacDonald 65k • written 6.7 years ago by n.lu • 0

votes

replies

919

views

qualitycontrol

updated 7.2 years ago by Mike Smith ★ 6.5k • written 7.2 years ago by XIA.PAN ▴ 20

votes

replies

1.0k

views

shinymethyl minfi epic microarray methylationepic qualitycontrol

7.3 years ago chelsey.ju • 0

votes

replies

1.1k

views

limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

7.6 years ago Bouzid.a ▴ 20

vote

replies

3.7k

views

GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 8.0 years ago by Stephanie M. Gogarten ▴ 870 • written 8.0 years ago by Lna • 0

votes

replies

1.5k

views

NUSE qualitycontrol microarray

updated 8.4 years ago by Diego Diez ▴ 760 • written 8.4 years ago by jacorvar ▴ 40

votes

replies

2.4k

views

rna-seq GC-Content qualitycontrol

updated 8.5 years ago by Matthew McCormack ▴ 180 • written 8.5 years ago by NS ▴ 60

vote

replies

1.7k

views

limma affy probe qualitycontrol design and contrast matrix

updated 9.4 years ago by Gordon Smyth 50k • written 9.4 years ago by alakatos ▴ 130

votes

1.2k

views

Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

17.0 years ago Amin Moghaddasi ▴ 130

12 results • Page 1 of 1

Recent ...

Replies

Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…

Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k

Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…

Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Awards • All

Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180