26 days ago • updated 12 days ago
Lluís Revilla Sancho
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updated 17 months ago by
Michael Love
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written 17 months ago by
irish.prg
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17 months ago
afsanarupa1
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updated 17 months ago by
Gordon Smyth
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written 18 months ago by
Istvan Albert
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updated 18 months ago by
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written 18 months ago by
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updated 23 months ago by
Gordon Smyth
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written 23 months ago by
Mikołaj Mierzejewski
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updated 3 months ago by
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written 3.2 years ago by
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3.3 years ago
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written 3.4 years ago by
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Recent ...
Replies
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
•
0
Hi,
I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation.
Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★
1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
•
0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed.
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