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Rmarkdown
•
reset
3
votes
3
replies
16k
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Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown
rstudio
knitr
7.6 years ago
Jon Bråte
▴ 250
3
votes
3
replies
2.1k
views
Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chunk
rmarkdown
suppressWarning
warning
updated 15 months ago by
Mike Smith
★ 6.5k • written 2.5 years ago by
Wolfgang Huber
★ 13k
0
votes
2
replies
3.6k
views
Error in file.choose() : file choice cancelled
package development
bioconductor
rstudio
rmarkdown
vignettes
6.5 years ago
clarisbaby
• 0
3
votes
2
replies
1.7k
views
Issue with pandoc-citeproc when rendering the f1000 article Rmd file from BiocWorkFlowTools
BiocWorkflowTools
rmarkdown
updated 7.0 years ago by
Andrzej Oleś
▴ 750 • written 7.0 years ago by
Leonardo Collado Torres
★ 1.1k
10
votes
3
replies
3.1k
views
News:
Updates to BiocStyle formatting
BiocStyle
vignettes
rmarkdown
latex
News
6.8 years ago
Andrzej Oleś
▴ 750
0
votes
2
replies
3.4k
views
installation of package 'rmarkdown' had non-zero exit status
rmarkdown
package updates
updated 7.8 years ago by
James W. MacDonald
66k • written 7.8 years ago by
tarek.mohamed
▴ 10
1
vote
1
reply
1.2k
views
Best practices for sharing RMarkdown-based supplemental PDFs?
rmarkdown
knitr
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
Keith Hughitt
▴ 180
1
vote
2
replies
1.4k
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs
DECIPHER
notebook
rmarkdown
updated 4.7 years ago by
Erik Wright
▴ 150 • written 4.7 years ago by
lauren.fitch
• 0
1
vote
1
reply
1.2k
views
Having issues mapping gene Ids during ReportingTools::publish() from Bioconductor.
ReportingTools
RNA-Seq
RMarkdown
updated 3.7 years ago by
James W. MacDonald
66k • written 3.7 years ago by
anthony.nash
▴ 20
6
votes
1
reply
3.2k
views
Tutorial:
BoF "Writing papers in Rmarkdown, BiocStyle... (and books, posters)"
biocstyle
Rmarkdown
Tutorial
6.8 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
634
views
Author footnotes in BiocWorkflowTools::f1000_article template
BiocWorkflowTools
rmarkdown
4.0 years ago
helucro
▴ 70
11 results • Page
1 of 1
Recent ...
Replies
Answer: Counter-directional LFC shrinkage
by
swbarnes2
★ 1.4k
The y axes in those plots are logged. The average for condition1 is going to be higher than condition2 because of the very high outliers. …
Comment: Cannot install oligo on Fedora
by
Guido Hooiveld
★ 4.0k
Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…
Comment: Error in gseDO function
by
Guido Hooiveld
★ 4.0k
I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…
Comment: Counter-directional LFC shrinkage
by
ATpoint
★ 4.2k
Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.
Votes
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
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Dario Strbenac
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shepherl
3.9k
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Robert Castelo
★ 3.3k
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to
kevin.rue
▴ 350
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Wei Shi
★ 3.6k
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