Showing : WGCNA • reset
15
votes
17
replies
23k
views
WGCNA: What is `soft thresholding`?
wgcna network analysis network correlation coexpression
updated 3.5 years ago by ▴ 730 • written 7.7 years ago by ▴ 40
8
votes
17
replies
15k
views
WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
WGCNA Sample Size Outliers
updated 8.7 years ago by • 0 • written 9.2 years ago by ▴ 150
14
votes
4
replies
14k
views
WGCNA Hub Gene Selection Method
WGCNA Hub Genes KmE Intramodular Connectivity
updated 8.8 years ago by ★ 3.0k • written 8.9 years ago by ▴ 150
11
votes
8
replies
8.6k
views
Pre-processing of RNA-Seq data for WGCNA and DGE
WGCNA RNA-Seq DESeq2 voom removebatcheffect()
updated 7.7 years ago by ★ 3.0k • written 7.7 years ago by ▴ 70
6
votes
8
replies
8.4k
views
WGCNA export to cytoscape
wgcna cytoscape
updated 6.4 years ago by ▴ 60 • written 7.0 years ago by ▴ 60
0
votes
2
replies
8.3k
views
Unable to install, update WGCNA and GO.db
WGCNA software error
4.3 years ago rproendo ▴ 20
3
votes
5
replies
7.7k
views
Wgcna with missing values - error with calculation of bicor correlations in pickSoftThreshold and blockwiseModules
software error rnaseq wgcna missing data
8.4 years ago • updated 8.0 years ago dvillarlozano ▴ 10
11
votes
5
replies
7.4k
views
Theoretical WGCNA Question
WGCNA Theory Scale-Free Topology
updated 29 days ago by • 0 • written 9.2 years ago by ▴ 150
3
votes
5
replies
7.4k
views
WGCNA HELP - Error: REAL() can only be applied to a 'numeric', not a 'integer'
wgcna rnaseq R bioconductor
updated 8.4 years ago by ★ 3.0k • written 8.4 years ago by ▴ 30
8
votes
4
replies
7.0k
views
WGCNA: overlapping colors in plotDendroAndColors?
wgcna plotDendroAndColors Network
updated 9.7 years ago by ★ 3.0k • written 9.7 years ago by ▴ 180
5
votes
6
replies
6.7k
views
WGCNA - module membership via max kME?
wgcna modules
updated 6.5 years ago by ★ 3.0k • written 6.6 years ago by ▴ 10
1
vote
1
reply
6.3k
views
WGCNA: Different Detect Cut Heights Across Multiple Blocks
wgcna clustering gene expression
updated 7.1 years ago by ★ 3.0k • written 7.1 years ago by ▴ 10
4
votes
5
replies
6.2k
views
WGCNA Tutorial Selection
wgcna coexpression
updated 8.9 years ago by ★ 8.2k • written 8.9 years ago by ▴ 10
2
votes
4
replies
6.2k
views
WGCNA: 1) low soft thresholding power, 2) large modules, 3) best correlation for different types of trait variables
WGCNA
updated 4.7 years ago by ★ 3.0k • written 4.7 years ago by • 0
7
votes
3
replies
5.5k
views
WGCNA sample size minimum: why?
wgcna
updated 3.2 years ago by • 0 • written 4.8 years ago by ▴ 160
4
votes
6
replies
5.5k
views
WGCNA automatic vs manual network creation
WGCNA
updated 8.6 years ago by ★ 3.0k • written 8.6 years ago by ▴ 30
2
votes
5
replies
5.3k
views
Can I use the WGCNA dendrogram to display a heatmap of gene expression?
wgcna heatmap desq2 clustering
updated 9.0 years ago by ★ 1.5k • written 9.0 years ago by ▴ 250
3
votes
2
replies
5.1k
views
Calculation of module membership in WGCNA
WGCNA RNA-seq ModuleMembership Network Hub gene
updated 24 months ago by ▴ 10 • written 3.8 years ago by ▴ 80
0
votes
6
replies
5.0k
views
WGCNA network creation error
WGCNA
updated 2.3 years ago by ★ 3.0k • written 8.8 years ago by ▴ 30
1
vote
8
replies
5.0k
views
Error in TOMplot (WGCNA)
WGCNA TOMplot
7.6 years ago Abhishek Singh ▴ 20
11
votes
3
replies
4.9k
views
WGCNA - Signed vs signed hybrid networks
wgcna
updated 7.9 years ago by ★ 3.0k • written 7.9 years ago by ▴ 20
2
votes
2
replies
4.9k
views
WGCNA extract genes from a module
WGCNA wgcna package
updated 5.7 years ago by ★ 3.0k • written 5.7 years ago by ▴ 10
2
votes
3
replies
4.7k
views
WGCNA "bicor" correlation
wgcna bicor WGCNA
8.6 years ago bcbio_uk ▴ 10
1
vote
12
replies
4.7k
views
WGCNA: correlations module-traits, and module membership-gene significance
WGCNA co-expression analysis gene significance module membership module-trait relationship
updated 23 months ago by ▴ 10 • written 4.7 years ago by ▴ 30
2
votes
6
replies
4.7k
views
Error running TOMplot in WGCNA package
wgcna network
updated 9.6 years ago by ▴ 180 • written 9.6 years ago by ▴ 250
2
votes
7
replies
4.6k
views
How to create "trait data" file for WGCNA
wgcna coexpression correlation microarray
updated 8.2 years ago by ★ 3.0k • written 8.3 years ago by ▴ 20
13
votes
1
reply
4.6k
views
WGCNA - Compare module preservation between class
WGCNA coexpression
updated 8.8 years ago by ★ 3.0k • written 8.8 years ago by ▴ 60
2
votes
4
replies
4.6k
views
WGCNA: intrepreting grey unassigned "module"?
WGCNA rnaseq gene expression co-expression network
updated 6.1 years ago by ★ 3.0k • written 6.1 years ago by ▴ 10
6
votes
2
replies
4.6k
views
WGCNA: how to change module color
wgcna
updated 5.6 years ago by ★ 3.0k • written 5.6 years ago by ▴ 20
3
votes
6
replies
4.6k
views
WGCNA gene significance and module membership
WGCNA R
updated 18 months ago by ★ 3.0k • written 4.5 years ago by • 0
5
votes
8
replies
4.5k
views
WGCNA tutorial II
WGCNA female and male datasets
updated 2.2 years ago by • 0 • written 4.1 years ago by ▴ 60
8
votes
6
replies
4.5k
views
Subset WGCNA results for export to Cytoscape
wgcna
updated 4.6 years ago by ★ 3.0k • written 4.6 years ago by ▴ 160
1
vote
8
replies
4.4k
views
WGCNA error : Error in hclust
WGCNA
updated 7.3 years ago by ★ 3.0k • written 7.4 years ago by ▴ 10
2
votes
2
replies
4.4k
views
How to select mergeCutHeight in WGCNA?
WGCNA mergeCutHeight
updated 6.4 years ago by ★ 3.0k • written 6.4 years ago by ▴ 60
1
vote
2
replies
4.4k
views
WGCNA distance measures, clustering with TOM based on adjacency matrix type = "distance" versus correlation
wgcna microarray clustering
updated 8.2 years ago by ★ 3.0k • written 8.2 years ago by • 0
9
votes
2
replies
4.3k
views
Filtering low variance genes for WGCNA
deseq2 WGCNA
updated 4.3 years ago by ★ 3.0k • written 4.3 years ago by ▴ 30
2
votes
3
replies
4.2k
views
WGCNA TOMType specification
WGCNA network analysis Sign
6.7 years ago • updated 6.0 years ago aurora.savino ▴ 10
5
votes
2
replies
4.2k
views
[WGCNA]How to visualize network of genes in one module
WGCNA network
updated 4.3 years ago by ★ 3.9k • written 4.3 years ago by ▴ 30
9
votes
7
replies
4.2k
views
WGCNA: relate modules to binary trait
WGCNA module eigengene binary trait R
updated 5.4 years ago by ▴ 30 • written 5.4 years ago by ▴ 50
0
votes
2
replies
4.2k
views
WGCNA - problems picking a suitable power
WGCNA pickSoftThreshold power RNA-Seq
updated 8.2 years ago by ★ 3.0k • written 8.3 years ago by ▴ 10
1
vote
5
replies
4.1k
views
WGCNA - How to prevent "blockwiseModules" command from dividing genes into multiple blocks?
WGCNA RNA-Seq
updated 7.6 years ago by ★ 3.0k • written 7.6 years ago by ▴ 70
0
votes
10
replies
4.0k
views
WGCNA differences two groups 10 replicates each group
WGCNA
updated 7.8 years ago by ★ 3.0k • written 7.8 years ago by • 0
4
votes
2
replies
4.0k
views
Selecting genes based on expressional variance
geneexpression wgcna rnaseq
updated 9.6 years ago by 1.6k • written 9.6 years ago by ▴ 250
1
vote
2
replies
4.0k
views
Rearrange dendrogram to match merged modules in WGCNA?
wgcna dendrogram network hclust
updated 9.6 years ago by ▴ 180 • written 9.6 years ago by ▴ 250
2
votes
9
replies
4.0k
views
Deseq2 normalization for WGCNA
RNASeq Deseq2 DESeq2 WGCNA
updated 2.0 years ago by 42k • written 2.4 years ago by ▴ 10
0
votes
4
replies
4.0k
views
WGCNA grey module
WGCNA
updated 13 months ago by ▴ 10 • written 6.0 years ago by ▴ 10
5
votes
8
replies
3.9k
views
Problem about picking soft threshold power in WGCNA software
wgcna rnaseq
written 7.2 years ago by ▴ 40
12
votes
4
replies
3.9k
views
WGCNA following salmon/DESeq2
deseq2 wgcna salmon
updated 5.5 years ago by ★ 3.0k • written 5.5 years ago by ▴ 30
10
votes
1
reply
3.7k
views
WGCNA: Module preservation vs consensus analysis
WGCNA wgcna
updated 3.1 years ago by ▴ 70 • written 3.2 years ago by ▴ 60
7
votes
9
replies
3.7k
views
WGCNA - networking RNA seq gives only one module!
WGCNA R network co-expression
updated 16 months ago by ★ 3.0k • written 5.0 years ago by ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards • All
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Popular Question to Ken C • 0
Popular Question to Johannes Rainer ★ 2.0k
Locations • All
United States, 4 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
United States, 1 hour ago
San Diego, 1 hour ago
Sweden, 1 hour ago
Traffic: 614 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6