Showing : champ • reset
3
votes
4
replies
8.8k
views
Problem loading R packages on MacBook Pro
newpackage ChAMP
updated 20 months ago by • 0 • written 2.5 years ago by • 0
0
votes
3
replies
7.7k
views
Downgrading R to an older version
MEDIPS ChAMP MEDIPS ChAMP
updated 9.8 years ago by ★ 8.2k • written 9.8 years ago by ▴ 70
0
votes
11
replies
6.3k
views
ChAMP input: Beta Matrix?
champ dmr analysis
updated 3.4 years ago by • 0 • written 8.2 years ago by • 0
6
votes
2
replies
5.7k
views
What is logFC and "B" in methylation analysis ??
limma champ logfc
updated 8.3 years ago by ★ 28k • written 8.3 years ago by ▴ 60
3
votes
7
replies
5.5k
views
error with champ.load
champ
written 6.6 years ago by ▴ 10
3
votes
9
replies
3.8k
views
champ.runCombat is failing: "invalid 'row.names' length"
champ
5.8 years ago Gurkenkönig ▴ 10
0
votes
6
replies
3.5k
views
Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
2.9 years ago FWNL15 • 0
1
vote
16
replies
3.4k
views
error in ChAMP loading file
ChAMP
updated 11 weeks ago by • 0 • written 18 months ago by • 0
3
votes
4
replies
3.0k
views
Error while using champ.svd() function in subset of data
ChAMP methylationepic epicarray epigenomics
updated 6.7 years ago by ▴ 140 • written 6.7 years ago by ▴ 10
4
votes
4
replies
3.0k
views
How to remove unwanted probes before normalization in 450k data
minfi 450k champ rnbeads
updated 8.2 years ago by 66k • written 8.2 years ago by ▴ 60
1
vote
3
replies
2.8k
views
normalization combination of noob + BMIQ/Quantile
minfi bmiq noob preprocessQuantile champ
updated 3.7 years ago by 66k • written 3.7 years ago by ▴ 50
1
vote
8
replies
2.8k
views
Error in Champ for Bioconductor analyzing Methlayion array data
champ bioconductor contrastmatrix compare.group
updated 5.4 years ago by ▴ 290 • written 5.4 years ago by • 0
0
votes
7
replies
2.7k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 19 months ago by 66k • written 2.0 years ago by • 0
1
vote
2
replies
2.6k
views
Error using ChAMP SVD analysis
ChAMP
updated 15 months ago by • 0 • written 2.9 years ago by • 0
2
votes
16
replies
2.6k
views
Methylation EPIC array: ChAMP package-champ.load added probes?
methylation epic champ champ.load() Methylation array
updated 4.4 years ago by ▴ 290 • written 4.4 years ago by ▴ 20
2
votes
7
replies
2.5k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray methylationArrayAnalysis ChAMP
updated 7 months ago by • 0 • written 3.5 years ago by ▴ 20
1
vote
4
replies
2.5k
views
New version of ChAMP can not proceed through champ.DMP
champ
6.8 years ago sarka.vorackova • 0
0
votes
1
reply
2.4k
views
ChAMP error: "Error in density.default(beta1.v[class1.v == 1]) :need at least 2 points to select a bandwidth automatically..."
ChAMP
updated 7.8 years ago by • 0 • written 8.6 years ago by • 0
1
vote
2
replies
2.4k
views
Beta-matrix - Differential methylation analysis
ChAMP tutorial
6.1 years ago Dave Emir • 0
2
votes
5
replies
2.4k
views
DMRcate fails in ChAMP package
ChAMP
updated 7.2 years ago by ▴ 90 • written 7.2 years ago by ▴ 10
1
vote
5
replies
2.3k
views
error while using champ.svd() function
champ
5.4 years ago sinha.puja ▴ 10
2
votes
3
replies
2.3k
views
Error in champ.load (v. 2.8.3)
champ ChAMP
updated 6.9 years ago by ▴ 90 • written 6.9 years ago by ▴ 10
3
votes
5
replies
2.2k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation ChAMP
updated 3 months ago by • 0 • written 3.5 years ago by • 0
0
votes
1
reply
2.2k
views
Tutorial: Differential Methylation Analysis using ChAMP
champ Tutorial
updated 4.9 years ago by ▴ 290 • written 4.9 years ago by • 0
1
vote
3
replies
2.2k
views
champ.DMP phenotypes and covariates
champ champ.dmp()
updated 6.6 years ago by ▴ 290 • written 6.6 years ago by ▴ 10
0
votes
5
replies
2.2k
views
DNA methylation analysis without raw data IDAT files
r illimina 450k methylation minfi champ tcga
updated 5.8 years ago by ▴ 290 • written 5.8 years ago by ▴ 60
0
votes
6
replies
2.2k
views
ChAMP filter removing good samples from different batch of EPIC arrays.
minfi champ
updated 6.8 years ago by ▴ 90 • written 6.8 years ago by • 0
2
votes
3
replies
2.1k
views
"Seems your IDAT file not from one Array"
EPIC methylation ChAMP
updated 6.2 years ago by ▴ 30 • written 6.2 years ago by • 0
0
votes
2
replies
2.1k
views
ChAMP Normalization on EPIC Methylation Data
ChAMP Normalization FunctionalNormalization methylation EPIC
5.6 years ago yuabrahamliu • 0
3
votes
6
replies
2.1k
views
could not find function "champ.load"
ChAMP champ 2.9.10 methylationepic
6.2 years ago david.ch • 0
0
votes
2
replies
2.1k
views
ChAMP::champ.norm Error in champ.BMIQ(beta[, x], design.v, sampleID = colnames(beta)[x], : task 1 failed - "only defined on a data frame with all…
ChAMP methylation BMIQ
updated 6 months ago by • 0 • written 5.1 years ago by ▴ 20
0
votes
2
replies
2.1k
views
Error using Bumphunter and Block finder using CHAMP
champ methylation 450k
7.5 years ago hrishi27n ▴ 20
0
votes
2
replies
2.1k
views
Error code using ChAMP/Bioconductor, unable to load data from EPIC methylation array
bioconductor methylation epic microarray champ
6.4 years ago csappleby-mallinder1 • 0
0
votes
1
reply
2.0k
views
News: Bug in ChAMP package champ.SVD() function
champ methylation 450k SVD EPIC News
7.8 years ago Yuan Tian ▴ 90
2
votes
5
replies
2.0k
views
Problem at champ.load
ChAMPdata ChAMP
updated 11 weeks ago by 66k • written 13 months ago by • 0
1
vote
2
replies
2.0k
views
Manhattan plot from ChAMP data
champ plot manhattan plot
updated 7.2 years ago by ▴ 90 • written 7.2 years ago by ▴ 10
0
votes
1
reply
2.0k
views
ChAMP Methylation analysis error code "could not find function champ.load"
champ methylationepic
updated 6.3 years ago by ▴ 290 • written 6.3 years ago by • 0
0
votes
3
replies
1.9k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
updated 10.3 years ago by ▴ 20 • written 10.3 years ago by ★ 4.2k
0
votes
3
replies
1.9k
views
error in champ.DMR using DMRcate (v2.8.3)
champ dmrcate IlluminaHumanMethylationEPICanno.ilm10b2.hg19
updated 6.9 years ago by ▴ 90 • written 6.9 years ago by • 0
1
vote
7
replies
1.9k
views
Error using champ.import
ChAMP EPICv2
updated 6 weeks ago by • 0 • written 11 months ago by • 0
2
votes
5
replies
1.9k
views
Error in Champ for Bioconductor performing GSEA analysis on Methlayion array data
champ bioconductor methyaltion epic array
updated 5.3 years ago by • 0 • written 5.4 years ago by • 0
0
votes
7
replies
1.9k
views
error with champ.load
ChAMP champ methylation
updated 9 months ago by • 0 • written 4.1 years ago by • 0
0
votes
2
replies
1.8k
views
Loading RData files into ChAMP
microarray champ 450k
updated 8.7 years ago by • 0 • written 8.7 years ago by ▴ 10
2
votes
3
replies
1.8k
views
ChAMP was installed and library in R, however, I can't use the function
champ
6.2 years ago doctorjiangtao ▴ 10
0
votes
1
reply
1.7k
views
install ChAMP under Ubuntu 18.04 in R 3.4.4 with error "maximal number of DLLs reached..."
ChAMP software error installation
6.0 years ago chxp • 0
0
votes
2
replies
1.7k
views
Use ChAMP to Find Differential Methylation Regions (DMR)
ChAMP DMR champ.DMR
5.6 years ago yuabrahamliu • 0
0
votes
6
replies
1.7k
views
Errors with champ.block
champ champ.block
6.5 years ago tiroshamit • 0
2
votes
6
replies
1.7k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 8 weeks ago by ▴ 180 • written 6 months ago by ▴ 10
0
votes
2
replies
1.7k
views
Some terms in EPIC Methylation Analysis
ChAMP SVD Array Slide Sample Plate
updated 5.6 years ago by ▴ 290 • written 5.6 years ago by • 0
0
votes
2
replies
1.7k
views
Error in champ.CNA (v. 2.6.0)
champ
updated 6.2 years ago by • 0 • written 7.2 years ago by ▴ 10
50 results • Page 1 of 1
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Comment: How to run allelic imbalance in apeglm by parayod376 • 0
Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
FYI, I emailed Benilton and he says he's working on a fix, so stay tuned!
Answer: Error in render R qmd document (could not find function "process") by James W. MacDonald 66k
If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
For some reason, that's still not working for me on command line. I ended up figuring out another way around, though, by converting the g…
Votes
Reduce the number of nodes appear in the cnetplot of clusterprofiler
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
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