Showing : copynumber • reset
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copynumber package issue
copynumber
updated 3.6 years ago by 65k • written 3.6 years ago by • 0
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3
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1.7k
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copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 3.4 years ago by ▴ 210 • written 3.6 years ago by • 0
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Is there a package that help me draw copy number alteration for each chromosome?
copynumber alteration
5.6 years ago Arman Shahrisa ▴ 20
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CopywriteR - low coverage-regions display very low numbers
copywriter copynumber
updated 5.7 years ago by ▴ 170 • written 5.7 years ago by • 0
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804
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Bug with interpolate.pcf.r from copynumber
copynumber
6.6 years ago aspergillus.cec • 0
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1.7k
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Mapping regions to gene symbols
annotation R copynumber
updated 6.9 years ago by 6.7k • written 6.9 years ago by • 0
0
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1
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1.2k
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Supporting grch38 and making the species agnostic pcf function in copynumber package
copynumber
7.1 years ago • updated 7.0 years ago shrirambhosle • 0
5
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1.6k
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Classes and methods for working with segmented copy number data
cgh copynumber
updated 7.1 years ago by 700 • written 7.8 years ago by 21k
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CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber cnvtools cnv copywriteR
updated 7.8 years ago by ▴ 170 • written 7.8 years ago by • 0
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4.2k
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Looking for annotation file for Affymetrix SNP 6.0
copynumber snp affymetrix
8.5 years ago KB ▴ 50
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6
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2.1k
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Copy number analysis from Illumina 550K chip
illumina copynumber crlmm
8.6 years ago stuti.agrawal • 0
1
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1
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1.3k
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Error genotyping with CRLMM
crlmm copynumber illumina
updated 8.6 years ago by ▴ 370 • written 8.6 years ago by • 0
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1.4k
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NAs with rawCopynumber() and discrepancies with estimated computed in parallel
crlmm copynumber
9.2 years ago kforner • 0
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6
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2.5k
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crlmm : copy number and genotyping of Illumina data
SNP Annotation Normalization crlmm copynumber SNP Annotation Normalization crlmm
updated 10.0 years ago by ▴ 1000 • written 10.0 years ago by ▴ 160
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2.1k
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crlmm : copy number and genotyping of Illumina data
SNP Annotation Normalization crlmm copynumber SNP Annotation Normalization crlmm
updated 10.3 years ago by ▴ 1000 • written 10.3 years ago by ▴ 160
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calling aberrations after segmentation with \"copynumber\" package
aCGH aCGH copynumber aCGH aCGH copynumber
10.3 years ago Guest User ★ 13k
2
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1
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1.6k
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DNAcopy
DNAcopy copynumber DNAcopy copynumber
updated 13.0 years ago by 21k • written 13.0 years ago by ▴ 140
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7
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1.7k
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DNA-Methylation, CopyNumber Results
Normalization Cancer limma copynumber Normalization Cancer limma copynumber
13.7 years ago Ina Hoeschele ▴ 620
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Simple beadarraySNP analysis
SNP Normalization Cancer Colon PROcess beadarraySNP copynumber SNP Normalization Cancer
15.0 years ago Dmitri Mouradov ▴ 20
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4
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1.5k
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Creating a new instance of oligoSnpSet
Annotation Cancer Breast VanillaICE copynumber Annotation Cancer Breast VanillaICE
15.5 years ago Steven McKinney ▴ 310
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CGHcall error
aCGH Normalization Cancer aCGH CGHcall copynumber aCGH Normalization Cancer aCGH CGHcall
updated 15.6 years ago by ▴ 110 • written 15.6 years ago by ▴ 40
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5
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1.9k
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Help needed with CopyNumber analysis for Affymetrix 250K arrays
Normalization probe copynumber Normalization probe copynumber
updated 16.3 years ago by ★ 2.4k • written 16.3 years ago by ▴ 270
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2
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1.5k
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Asymmetric colors for heatmap
copynumber copynumber
18.8 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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