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derfinder
•
reset
8
votes
31
replies
4.4k
views
derfinder: analyzeChr() breaks on chromosomes > 22
derfinder
9.5 years ago
jessica.hekman
▴ 40
9
votes
20
replies
2.7k
views
derfinder: analyzeChr() freezes in f-stat calculation
derfinder
updated 9.1 years ago by
Leonardo Collado Torres
★ 1.0k • written 9.2 years ago by
jessica.hekman
▴ 40
5
votes
20
replies
3.1k
views
derfinder: fullCoverage() problems
derfinder
updated 9.6 years ago by
Leonardo Collado Torres
★ 1.0k • written 9.6 years ago by
jessica.hekman
▴ 40
3
votes
13
replies
2.4k
views
IRanges error from derfinder analyzeChr with custom TxDb?
derfinder
genomicfeatures
genomicranges
updated 6.7 years ago by
Leonardo Collado Torres
★ 1.0k • written 6.7 years ago by
fruce_ki
▴ 20
1
vote
10
replies
2.4k
views
derfinder failing in mergeResults()
derfinder
updated 9.2 years ago by
Leonardo Collado Torres
★ 1.0k • written 9.4 years ago by
jessica.hekman
▴ 40
1
vote
10
replies
3.4k
views
Issue creating a genomic state object in derfinder from an Ensembl GTF file
derfinder
genomicfeatures
7.2 years ago
Leonardo Collado Torres
★ 1.0k
0
votes
7
replies
2.1k
views
regionMatrix for derfinder crashes with seqnames issue on non-human data
derfinder
GenomeInfoDb
GenomicRanges
7.0 years ago
Wayne
• 0
0
votes
6
replies
1.9k
views
derfinder and BAM indexes
derfinder
9.6 years ago
jessica.hekman
▴ 40
2
votes
6
replies
2.2k
views
derfinder gets stuck in calculatePvalues
derfinder
software error
rnaseq
8.9 years ago
drramki.chop
• 0
3
votes
5
replies
1.2k
views
Detection of large regions of expression
derfinder
intergenic expression
updated 4.7 years ago by
Leonardo Collado Torres
★ 1.0k • written 4.7 years ago by
António Miguel de Jesus Domingues
▴ 510
4
votes
4
replies
1.1k
views
derfinder model.matrix with limma or single base-level F-statistics analysis
derfinder
2.8 years ago
Konstantinos Yeles
▴ 80
3
votes
3
replies
1.7k
views
derfinder: how to merge regions and counts from individual chromosomes
derfinder
recount
updated 6.5 years ago by
Leonardo Collado Torres
★ 1.0k • written 6.5 years ago by
António Miguel de Jesus Domingues
▴ 510
0
votes
3
replies
1.3k
views
How to preserve the strand of coverage in derfinder::regionMatrix() ?
derfinder
updated 6.7 years ago by
Leonardo Collado Torres
★ 1.0k • written 6.7 years ago by
fruce_ki
▴ 20
2
votes
3
replies
1.4k
views
derfinder: mergeResults() running for three days and still going...
derfinder
9.5 years ago
jessica.hekman
▴ 40
1
vote
2
replies
1.3k
views
derfinder on bacteria PE strand specific RNA-seq
derfinder
7.5 years ago
eva.pinatel
▴ 10
3
votes
2
replies
987
views
DESeq2 normalization when using with derfinder
Normalization
DESeq2
derfinder
2.6 years ago
Debayan
▴ 20
0
votes
1
reply
1.7k
views
error with base-level DERfinder using large sample sizes
derfinder
updated 7.2 years ago by
Leonardo Collado Torres
★ 1.0k • written 7.2 years ago by
andrewelamb
• 0
0
votes
1
reply
1.7k
views
Error message suggestion for fullCoverage in derfinder
derfinder
updated 9.2 years ago by
Leonardo Collado Torres
★ 1.0k • written 9.3 years ago by
jessica.hekman
▴ 40
0
votes
1
reply
1.5k
views
derfinder fails on findRegions step
derfinder
updated 8.9 years ago by
Leonardo Collado Torres
★ 1.0k • written 9.0 years ago by
pschaugh
• 0
0
votes
1
reply
1.3k
views
derfinder fullCoverage() changes chromosome style and then regionMatrix() complains and ignores provided 'currentStyle'
derfinder
7.0 years ago
Wayne
• 0
2
votes
1
reply
1.0k
views
Derinder options (species, annotations style)
derfinder
rnaseq
differential expression
updated 6.8 years ago by
Leonardo Collado Torres
★ 1.0k • written 6.8 years ago by
fruce_ki
▴ 20
2
votes
1
reply
1.2k
views
Read normalization in derfinder
derfinder
normalization
rnaseq
updated 6.8 years ago by
Leonardo Collado Torres
★ 1.0k • written 6.8 years ago by
helene.gylling
▴ 10
2
votes
1
reply
1.4k
views
derfinder mean Expressed Region cutoff
derfinder
updated 6.5 years ago by
Leonardo Collado Torres
★ 1.0k • written 6.5 years ago by
António Miguel de Jesus Domingues
▴ 510
23 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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