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Showing :
epigenetics
•
reset
0
votes
4
replies
397
views
limma with interaction term
R
biostatistics
limma
Epigenetics
3 months ago • updated 12 weeks ago
Jitendra
▴ 10
0
votes
5
replies
621
views
error while running DMRcate
stattistics
epicarray
Epigenetics
DMRcate
updated 6 months ago by
James W. MacDonald
66k • written 6 months ago by
Jitendra
▴ 10
3
votes
4
replies
911
views
DMRcate design
Epigenetics
EpigeneticsWorkflow
DMRcate
8 months ago • updated 7 months ago
Jitendra
▴ 10
1
vote
1
reply
374
views
Further analysis after limma regression output
statistics
Epigenetics
limma
updated 8 months ago by
James W. MacDonald
66k • written 8 months ago by
Jitendra
▴ 10
0
votes
0
replies
496
views
combat for batch effect correction in EPIC array data
Epigenetics
combat
EPIC
14 months ago
Jitendra
▴ 10
0
votes
0
replies
579
views
How to find regulatory region position and associated genes for CpG sites
Epigenetics
R
Bioconducter
14 months ago
Jitendra
▴ 10
0
votes
3
replies
998
views
batch effect in EPIC array data
statistics
Epigenetics
R
updated 15 months ago by
Lluís Revilla Sancho
▴ 730 • written 15 months ago by
Jitendra
▴ 10
0
votes
0
replies
439
views
rnbeads inference
epigenetics
RnBeads
15 months ago
Jitendra
▴ 10
0
votes
0
replies
637
views
Job:
EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq
Transcriptomics
Pathways
Epigenetics
RNASeq
18 months ago
whduke
• 0
0
votes
0
replies
870
views
Job:
Postdoctoral Fellow in Epigenomcis/Neurobiology (MGH/Harvard Medical School, Boston)
GenomicVariation
SingleCell
Autism
Neurogenesis
Epigenetics
19 months ago
sudhir.thakurela
• 0
0
votes
0
replies
826
views
Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
23 months ago
xubeisi
• 0
0
votes
6
replies
1.3k
views
regression analysis for epic array methylation data using limma
limma
Epigenetics
STATISTICS
R
24 months ago
Jitendra
▴ 10
0
votes
0
replies
578
views
normalisation options in RnBeads
Epigenetics
RnBeads
R
Bioconducter
2.1 years ago
Jitendra
▴ 10
0
votes
0
replies
744
views
filtering options in RnBeads for array data
Epigenetics
RnBeads
MethylationArrayData
methylationArrayAnalysis
2.1 years ago
Jitendra
▴ 10
0
votes
8
replies
1.9k
views
error in RnBeads installation
Epigenetics
RnBeads
R
2.2 years ago
Jitendra
▴ 10
0
votes
2
replies
1.8k
views
Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC
arrays
limma
minfi
Epigenetics
updated 3.5 years ago by
Gordon Smyth
50k • written 3.5 years ago by
Jeff
▴ 20
0
votes
0
replies
994
views
Job:
Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer
computational biology
bioinformatics
epigenetics
Job
4.2 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
1.1k
views
Beta values and M values cluster differently
methylationEPIC
minfi
microarray
epigenetics
EPIC
5.2 years ago
rmf
▴ 20
0
votes
0
replies
835
views
Best normalisation method
microarray
methylationEPIC
epigenetics
minfi
EPIC
5.2 years ago
rmf
▴ 20
0
votes
0
replies
1.2k
views
Job:
PhD computational position - Milan
epigenetics
transcription
computational biology
Job
6.8 years ago
mattia pelizzola
▴ 200
0
votes
1
reply
1.7k
views
Epigenetic clock (Horvath): package?
methylation
illimina 450k methylation
epigenetics
minfi
updated 7.2 years ago by
Wade Davis
▴ 60 • written 7.3 years ago by
Brian Smith
▴ 120
0
votes
1
reply
1.6k
views
News:
Plotly uprading issue in ChAMP package
ChAMP
Epigenetics
plotly
Shiny
GUI
News
7.6 years ago • updated 7.4 years ago
Yuan Tian
▴ 90
0
votes
0
replies
1.4k
views
News:
ChAMP2 is online
epigenetics
EPIC
450K
ChAMP
News
7.6 years ago
Yuan Tian
▴ 90
0
votes
0
replies
2.7k
views
Job:
Bioinformatics Scientist position at Johns Hopkins
R
USA
Hopkins
GI Cancer
Epigenetics
Job
8.2 years ago
asharm37
• 0
1
vote
0
replies
1.7k
views
Job:
Post-doc Position in Epigenetic Bioinformatics
cancer
sequencing
epigenetics
computational biology
bioinformatics
Job
8.5 years ago
Yassen Assenov
▴ 10
0
votes
0
replies
1.6k
views
ChAMP: Error using champ.norm() function
ChAMP
methylation
epigenetics
8.6 years ago
jdangelo
• 0
0
votes
0
replies
1.5k
views
Job: Bioinformatics Analyst at Johns Hopkins Medical School (Masters or Ph.D.)
Sequencing
Epigenetics
PROcess
Sequencing
Epigenetics
PROcess
10.1 years ago
Brian Herb
▴ 80
0
votes
0
replies
1.9k
views
job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics
Infrastructure
Epigenetics
Infrastructure
10.4 years ago
Holger Klein
▴ 20
0
votes
0
replies
1.4k
views
[Course] CSAMA 2013: Computational Statistics for Genome Biology (11th edition) Brixen, Italy, June 24-28th 2013
Sequencing
Epigenetics
Cancer
Sequencing
Epigenetics
Cancer
11.3 years ago
stefano iacus
▴ 430
0
votes
0
replies
1.4k
views
IS PROGRAMMER/ANALYST I / 40 HOUR / DAY / BWH - CHANNING LABORATORY
Epigenetics
Annotation
Network
Epigenetics
Annotation
Network
12.3 years ago
Guest User
★ 13k
0
votes
3
replies
1.4k
views
how to install gnGNF1a cdf and probe files to a recent version of R (2.13.1)?
Epigenetics
cdf
Epigenetics
cdf
updated 12.5 years ago by
James W. MacDonald
66k • written 12.5 years ago by
Nicholas Wong
▴ 30
0
votes
0
replies
1.4k
views
Position Assistant Professor Bioinformatics
Epigenetics
Epigenetics
12.7 years ago
Martin Zenke
▴ 10
0
votes
0
replies
1.8k
views
4 PhD positions in cancer computational biology
Sequencing
Epigenetics
Cancer
Sequencing
Epigenetics
Cancer
12.7 years ago
mattia pelizzola
▴ 200
0
votes
0
replies
1.5k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq
ChIPSeq
Epigenetics
Cancer
chipseq
SANTA
RNASeq
ChIPSeq
Epigenetics
Cancer
SANTA
12.7 years ago
stefano iacus
▴ 430
0
votes
0
replies
1.3k
views
Head of Junior Research Group - Bioinformatics
Epigenetics
Epigenetics
12.8 years ago
Qiong Lin
▴ 10
0
votes
3
replies
2.6k
views
edgeR - multiple comparisions
Epigenetics
GO
edgeR
Epigenetics
GO
edgeR
updated 13.0 years ago by
Sridhara Gupta Kunjeti
▴ 320 • written 13.0 years ago by
Davis McCarthy
▴ 260
0
votes
0
replies
1.8k
views
qPCR Events and 30% Discount on qPCR workshops
miRNA
qPCR
Epigenetics
GO
Visualization
Network
probe
microRNA
miRNA
qPCR
Epigenetics
14.6 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
2
replies
2.3k
views
pd.hugene.1.0.st.v1
Epigenetics
Annotation
oligo
Epigenetics
Annotation
oligo
updated 14.8 years ago by
Benilton Carvalho
★ 4.3k • written 14.8 years ago by
Mark Robinson
★ 1.1k
0
votes
0
replies
1.7k
views
Post-doc position in Paris
Sequencing
Epigenetics
Cancer
Breast
DECIPHER
Sequencing
Epigenetics
Cancer
Breast
14.9 years ago
Joern Toedling
▴ 450
0
votes
0
replies
1.2k
views
Bioinformatics postdoc in Brussels
Sequencing
Epigenetics
Cancer
Breast
Sequencing
Epigenetics
Cancer
Breast
15.2 years ago
Vincent Detours
▴ 80
0
votes
0
replies
1.1k
views
browseGenome width question (rtracklayer)
Epigenetics
GO
hgu95av2
GLAD
rtracklayer
Epigenetics
GO
hgu95av2
GLAD
rtracklayer
15.3 years ago
Michael Lawrence
▴ 620
0
votes
0
replies
1.2k
views
sd==0 for some probesets when using gcrma
Microarray
Proteomics
Epigenetics
Normalization
GO
Cancer
hgu95av2
affy
graph
gcrma
GO
15.4 years ago
Dick Beyer
★ 1.4k
0
votes
1
reply
1.3k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics
cdf
affy
makecdfenv
plier
affxparser
preprocessCore
Epigenetics
cdf
affy
updated 15.5 years ago by
dorothyc
▴ 140 • written 15.5 years ago by
James W. MacDonald
66k
0
votes
0
replies
1.3k
views
Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics
Cancer
probe
affy
xps
Epigenetics
Cancer
probe
affy
xps
15.9 years ago
Martin Morgan
25k
0
votes
1
reply
1.2k
views
Fwd: biomaRt column order
Epigenetics
biomaRt
Epigenetics
biomaRt
15.9 years ago
steffen@stat.Berkeley.EDU
▴ 600
0
votes
0
replies
953
views
[ Re: Fwd: biomaRt column order]
Epigenetics
biomaRt
Epigenetics
biomaRt
15.9 years ago
steffen@stat.Berkeley.EDU
▴ 600
0
votes
0
replies
1.8k
views
Bioinformatics Positions, National Cancer Centre Singapore
Microarray
Epigenetics
Cancer
Microarray
Epigenetics
Cancer
16.1 years ago
Julian Lee
▴ 140
0
votes
0
replies
1.6k
views
Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics
Bayesian
Cancer
Breast
Epigenetics
Bayesian
Cancer
Breast
16.4 years ago
Jean Yee Hwa Yang
▴ 130
0
votes
0
replies
1.3k
views
Bioinformatics positions
Microarray
Genetics
Proteomics
Epigenetics
Microarray
Genetics
Proteomics
Epigenetics
16.5 years ago
French, Jef NIH/NIEHS
▴ 30
49 results • Page
1 of 1
Recent ...
Replies
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat
by
minardsmitha
▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons
by
boczniak767
▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Votes
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
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