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fgsea
•
reset
4
votes
5
replies
328
views
Method to find pathways different between 2 groups
fgsea
GSVA
CAMERA
13 days ago • updated 4 days ago
Chris
▴ 10
4
votes
2
replies
629
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea
edgeR
17 days ago • updated 13 days ago
gene_bioconductor
▴ 10
2
votes
2
replies
229
views
fgsea significant result
fgsea
14 days ago
Chris
▴ 10
0
votes
0
replies
140
views
Empty table plot using plotGseaTable()
fgsea
18 days ago • updated 15 days ago
Chris
▴ 10
2
votes
2
replies
238
views
Perform gene set enrichment analysis using fgsea on two conditions that don't have differential express genes
fgsea
20 days ago
Chris
▴ 10
0
votes
4
replies
224
views
FGSEA pre-ranked input in increasing order or decreasing
fgsea
4 weeks ago
sropri
• 0
0
votes
2
replies
373
views
The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea
gsea
8 weeks ago • updated 6 weeks ago
Gordon
• 0
1
vote
5
replies
368
views
fgsea fork
fgsea
updated 7 weeks ago by
James W. MacDonald
65k • written 7 weeks ago by
yimjohns
• 0
0
votes
5
replies
533
views
Help with DESeq results to pathways with the fgsea package
fgsea
rna
updated 3 months ago by
James W. MacDonald
65k • written 3 months ago by
Gordon
• 0
3
votes
2
replies
403
views
cant' download fgsea_1.20.0.tar.gz
download
fgsea
9 months ago
luca.s
▴ 50
0
votes
0
replies
640
views
using fgsea to compare two datasets
GSEA
fgsea
10 months ago
Cen
• 0
0
votes
0
replies
870
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
11 months ago
pg45863
▴ 10
7
votes
6
replies
2.2k
views
Implementation of the "original" GSEA algorithm in R
clusterProfiler
GSEA
fgsea
updated 16 months ago by
Gordon Smyth
50k • written 17 months ago by
nhaus
▴ 30
0
votes
0
replies
382
views
is it possible to limit fgsea to particular tissue type?
fgsea
18 months ago
kavator
▴ 30
0
votes
4
replies
1.1k
views
GO data for fgsea: should ensembl data be augmented to contain parent terms?
biomaRt
GO
ensembldb
fgsea
19 months ago
dario.beraldi
• 0
0
votes
7
replies
1.9k
views
Problem with fgsea
fgsea
updated 2.1 years ago by
alserg
▴ 260 • written 2.1 years ago by
Barista
• 0
2
votes
3
replies
3.0k
views
fgsea not downloading due to new r version. Is there a way around this?
r
fgsea
2.3 years ago
amir.khan
• 0
0
votes
1
reply
2.4k
views
Tied Ranks in fgsea
fgsea
updated 3.0 years ago by
Guido Hooiveld
★ 4.0k • written 3.0 years ago by
zli1
• 0
2
votes
3
replies
1.8k
views
Compute fgsea with my own database with R version 4.0.2
R
fgsea
updated 3.0 years ago by
alserg
▴ 260 • written 3.0 years ago by
julie.hardy
• 0
3
votes
3
replies
4.2k
views
Warning with the example of GSEA
fgsea
fgse
3.1 years ago • updated 3.0 years ago
julie.hardy
• 0
2
votes
2
replies
2.3k
views
fgsea usage question - what gene set to use?
fgsea
3.2 years ago
alexandr.gopanenko
▴ 50
0
votes
2
replies
1.7k
views
Error: Aesthetics must be either length 1 or the same as the data (1): x and xend
fgsea
updated 3.2 years ago by
Kevin Blighe
★ 3.9k • written 3.2 years ago by
yueli7
▴ 20
0
votes
3
replies
2.2k
views
why does stat column disappears after lfcshrink on deseq 2 and why does fgsea uses stat column (not affected by shrinking) for fgsea?
fgsea
DESeq2
updated 3.2 years ago by
ATpoint
★ 4.1k • written 3.2 years ago by
kavator
▴ 30
0
votes
1
reply
1.1k
views
do expression of leading edges within a negative NES term reflect the same direction as it's enrichment score? aka downregulation of leading edges
fgsea
updated 3.9 years ago by
alserg
▴ 260 • written 3.9 years ago by
kavator
▴ 30
1
vote
2
replies
1.5k
views
what does gseaparam argument in fgsea() means?
fgsea
updated 3.9 years ago by
alserg
▴ 260 • written 3.9 years ago by
kavator
▴ 30
3
votes
2
replies
1.4k
views
Calculate S/N ratios from apeglm for GSEA
apeglm
fgsea
Signal-To-Noise Ratio
updated 5.0 years ago by
Michael Love
42k • written 5.0 years ago by
coulsonr
▴ 20
8
votes
5
replies
3.5k
views
How to get t-statistic values using edgeR?
r
edger
t-statistic
fgsea
gsea
updated 5.0 years ago by
Gordon Smyth
50k • written 5.0 years ago by
Biologist
▴ 110
0
votes
3
replies
2.9k
views
fgsea p-values are mostly the same upon analysis
fgsea
gsea
sc-rnaseq
5.8 years ago
atakanekiz
▴ 30
1
vote
2
replies
1.8k
views
ReactomePA / Reactome: GSEA error message
reactomepa
reactome
gsea
fgsea
5.9 years ago
martin.busch
• 0
1
vote
5
replies
2.1k
views
FGSEA only runs with <1000 permutations
fgsea
gsea
updated 6.8 years ago by
alserg
▴ 260 • written 6.8 years ago by
shawn.w.foley
• 0
0
votes
8
replies
2.8k
views
Does fgsea order the stats argument?
fgsea
6.9 years ago
rubi
▴ 110
6
votes
15
replies
2.9k
views
Change in pathway IDs scheme in reactome.db
reactome.db
fgsea
updated 7.1 years ago by
willem.ligtenberg
▴ 150 • written 7.1 years ago by
alserg
▴ 260
2
votes
1
reply
1.5k
views
Direction aware fgsea test
fgsea
gsea
updated 7.3 years ago by
alserg
▴ 260 • written 7.3 years ago by
rubi
▴ 110
33 results • Page
1 of 1
Recent ...
Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
Galina
• 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
robersy
• 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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