Showing : fgsea • reset
8
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5
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How to get t-statistic values using edgeR?
r edger t-statistic fgsea gsea
updated 5.0 years ago by 50k • written 5.0 years ago by ▴ 110
7
votes
6
replies
2.2k
views
Implementation of the "original" GSEA algorithm in R
clusterProfiler GSEA fgsea
updated 16 months ago by 50k • written 17 months ago by ▴ 30
6
votes
15
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2.9k
views
Change in pathway IDs scheme in reactome.db
reactome.db fgsea
updated 7.1 years ago by ▴ 150 • written 7.1 years ago by ▴ 260
4
votes
2
replies
618
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Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea edgeR
14 days ago • updated 10 days ago gene_bioconductor ▴ 10
4
votes
5
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312
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Method to find pathways different between 2 groups
fgsea GSVA CAMERA
11 days ago • updated 1 day ago Chris ▴ 10
3
votes
2
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1.4k
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Calculate S/N ratios from apeglm for GSEA
apeglm fgsea Signal-To-Noise Ratio
updated 5.0 years ago by 42k • written 5.0 years ago by ▴ 20
3
votes
2
replies
401
views
cant' download fgsea_1.20.0.tar.gz
download fgsea
9 months ago luca.s ▴ 50
3
votes
3
replies
4.2k
views
Warning with the example of GSEA
fgsea fgse
3.1 years ago • updated 3.0 years ago julie.hardy • 0
2
votes
1
reply
1.5k
views
Direction aware fgsea test
fgsea gsea
updated 7.3 years ago by ▴ 260 • written 7.3 years ago by ▴ 110
2
votes
2
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2.3k
views
fgsea usage question - what gene set to use?
fgsea
3.2 years ago alexandr.gopanenko ▴ 50
2
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2
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221
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fgsea significant result
fgsea
12 days ago • updated 11 days ago Chris ▴ 10
2
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3
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3.0k
views
fgsea not downloading due to new r version. Is there a way around this?
r fgsea
2.3 years ago amir.khan • 0
2
votes
3
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1.8k
views
Compute fgsea with my own database with R version 4.0.2
R fgsea
updated 3.0 years ago by ▴ 260 • written 3.0 years ago by • 0
2
votes
2
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231
views
Perform gene set enrichment analysis using fgsea on two conditions that don't have differential express genes
fgsea
17 days ago Chris ▴ 10
1
vote
2
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1.5k
views
what does gseaparam argument in fgsea() means?
fgsea
updated 3.9 years ago by ▴ 260 • written 3.9 years ago by ▴ 30
1
vote
5
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363
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fgsea fork
fgsea
updated 6 weeks ago by 65k • written 7 weeks ago by • 0
1
vote
2
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1.8k
views
ReactomePA / Reactome: GSEA error message
reactomepa reactome gsea fgsea
5.9 years ago martin.busch • 0
1
vote
5
replies
2.1k
views
FGSEA only runs with <1000 permutations
fgsea gsea
updated 6.8 years ago by ▴ 260 • written 6.8 years ago by • 0
0
votes
0
replies
638
views
using fgsea to compare two datasets
GSEA fgsea
10 months ago Cen • 0
0
votes
4
replies
1.1k
views
GO data for fgsea: should ensembl data be augmented to contain parent terms?
biomaRt GO ensembldb fgsea
19 months ago dario.beraldi • 0
0
votes
2
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368
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The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea gsea
7 weeks ago • updated 6 weeks ago Gordon • 0
0
votes
4
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215
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FGSEA pre-ranked input in increasing order or decreasing
fgsea
28 days ago sropri • 0
0
votes
5
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523
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Help with DESeq results to pathways with the fgsea package
fgsea rna
updated 3 months ago by 65k • written 3 months ago by • 0
0
votes
2
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1.7k
views
Error: Aesthetics must be either length 1 or the same as the data (1): x and xend
fgsea
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by ▴ 20
0
votes
0
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379
views
is it possible to limit fgsea to particular tissue type?
fgsea
18 months ago kavator ▴ 30
0
votes
0
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863
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff clusterProfiler fgsea
11 months ago pg45863 ▴ 10
0
votes
8
replies
2.8k
views
Does fgsea order the stats argument?
fgsea
6.9 years ago rubi ▴ 110
0
votes
7
replies
1.9k
views
Problem with fgsea
fgsea
updated 2.1 years ago by ▴ 260 • written 2.1 years ago by • 0
0
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1
reply
1.1k
views
do expression of leading edges within a negative NES term reflect the same direction as it's enrichment score? aka downregulation of leading edges
fgsea
updated 3.9 years ago by ▴ 260 • written 3.9 years ago by ▴ 30
0
votes
3
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2.2k
views
why does stat column disappears after lfcshrink on deseq 2 and why does fgsea uses stat column (not affected by shrinking) for fgsea?
fgsea DESeq2
updated 3.2 years ago by ★ 4.1k • written 3.2 years ago by ▴ 30
0
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1
reply
2.4k
views
Tied Ranks in fgsea
fgsea
updated 3.0 years ago by ★ 4.0k • written 3.0 years ago by • 0
0
votes
0
replies
133
views
Empty table plot using plotGseaTable()
fgsea
15 days ago • updated 13 days ago Chris ▴ 10
0
votes
3
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2.9k
views
fgsea p-values are mostly the same upon analysis
fgsea gsea sc-rnaseq
5.8 years ago atakanekiz ▴ 30
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Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
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Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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