Showing : limma • reset
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Multi-factorial, longitudinal disease progression analysis with unbalanced patient sampling - duplicateCorrelation or blocking?
rna-seq duplicateCorrelation limma voom
20 hours ago Dylan.Sheerin • 0
1
vote
1
reply
104
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error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
limma
updated 2 days ago by 65k • written 2 days ago by • 0
1
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6
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178
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Extremely small p-values using Limma for proteomic data
Proteomics limma
updated 1 day ago by ★ 3.3k • written 2 days ago by • 0
1
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2
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353
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limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 5 days ago by 50k • written 6 days ago by • 0
0
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1
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119
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Gene-by-sample covariates in limma
Metabolomics limma
updated 6 days ago by 50k • written 7 days ago by • 0
3
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4
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233
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Help with error using camera() in limma
CAMERA limma
9 days ago Chris • 0
0
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3
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252
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Assist me in determining whether the analysis process using the limma package has been executed correctly.
GEOquery ArrayExpress limma DifferentialExpression
updated 9 days ago by 65k • written 10 days ago by • 0
0
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2
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173
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limma-voom: Calculate the log-fold change in gene expression within a sample
limma RNASeq voom
written 16 days ago by • 0
0
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2
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221
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RNAseq:Technical replicates from different batches
technicalReplicates BatchEffect limma RNASeq
20 days ago • updated 17 days ago catv • 0
14
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17
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1.2k
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Why p value inconsistent when using different number of pathway score?
limma
19 days ago • updated 8 days ago Chris • 0
3
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2
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224
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Log-cpm values from limma
limma edgeR RNASeq
21 days ago • updated 6 hours ago Shaimaa Gamal • 0
0
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7
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326
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Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
22 days ago • updated 16 days ago hortense96 • 0
1
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3
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353
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Why is my gene not significantly differentially expressed?
limmaGUI edgeR limma
updated 24 days ago by 50k • written 29 days ago by • 0
5
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9
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936
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Light difference when using coef vs omit a group when compare 3 groups.
limma
29 days ago • updated 21 days ago Chris • 0
15
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23
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2.0k
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The difference when using Limma compare between 3 conditions vs 2 conditions
limma
5 weeks ago • updated 9 days ago Chris • 0
0
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4
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606
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How to correct for known and surrogate variables in DESeq2?
DESeq2 BatchEffect sva limma
updated 23 days ago by 42k • written 6 months ago by • 0
5
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9
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1.3k
views
Batch correction and repeated measures
RUVSeq sva limma
updated 21 days ago by 50k • written 7 months ago by ▴ 10
3
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1
reply
1.5k
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma ebayes bayesian ls
updated 1 day ago by 50k • written 5.6 years ago by ▴ 10
5
votes
8
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8.8k
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Limma design with continuous and categorical covariates
limma batch effect covariates microarray
updated 16 days ago by • 0 • written 7.7 years ago by ▴ 30
2
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2
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1.1k
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limma for gene expression analysis with big and unbalanced sample size
limma microarray statistics
updated 9 days ago by • 0 • written 7.9 years ago by • 0
0
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3
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1.5k
views
Limma, eBayes different sample size of groups and adjustment
limma limma
updated 9 days ago by • 0 • written 13.0 years ago by ▴ 10
21 results • Page 1 of 1
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
That ll be helpful. Thank you.
Comment: Log-cpm values from limma by Shaimaa Gamal • 0
I have performed RUVg correction and extracted W, factors of unwanted variation. According to limma guide, > In the limma approach to RNA…
Comment: DSS CpG coverage threshold by j.gilbert • 0
Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Segmentation is of the whole genome, I'll write some code for doing this later today.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …
Votes
Bioconductor 3.19 is Released!
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
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