Showing : lmFit • reset
1
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923
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Limma for paired and unpaired samples. Strange number of DEGs in unpaired samples
limma lmfit R DifferentialExpression
updated 24 months ago by ★ 4.1k • written 24 months ago by • 0
2
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3
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1.3k
views
lmFit, continuous exposure, adjustment covariates
lmFit
updated 2.0 years ago by 50k • written 2.9 years ago by • 0
0
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0
replies
774
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Incorporating limma duplicateCorrelation() function into minfi dmpFinder() for a mixed model approach
minfi limma lmm lmfit dmpFinder
3.0 years ago kyleyxw • 0
3
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4
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1.1k
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lmFit, number of proteins
lmFit
3.0 years ago • updated 2.9 years ago AyHi • 0
1
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5
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1.4k
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Limma for proteomic data! Please Help!
limma voom lmfit ebayesfit
updated 4.1 years ago by 50k • written 4.1 years ago by • 0
4
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6
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732
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mean log2CPM after model fit (lmFit)
limma lmFit mean expression level
updated 4.1 years ago by 65k • written 4.1 years ago by • 0
2
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2
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910
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design matrix and correlate variable
limma lmfit
updated 5.0 years ago by ★ 28k • written 5.0 years ago by ▴ 10
2
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2
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1.1k
views
Different results from limma depending on whether or not I have an intercept term in my model
limma lmfit voom limma design matrix voomwithqualityweights
updated 5.4 years ago by 50k • written 5.4 years ago by ▴ 10
1
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8
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1.6k
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Design matrix for regressing gene expression on a continuous variable - age
limma lmfit design matrix r
updated 5.8 years ago by ★ 28k • written 5.8 years ago by • 0
1
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7
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1.6k
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model.matrix from GDS data
model.matrix lmFit eBayes GEOquery limma
6.2 years ago darthratus • 0
2
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3
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1.7k
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Differential expression of nomalised and log2 transformed data in limma
limma lmfit model.matrix differential gene expression
6.7 years ago • updated 6.6 years ago stinehedensted • 0
2
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5
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2.4k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma contrast missing data lmfit makecontrasts
updated 6.7 years ago by 50k • written 6.7 years ago by ▴ 10
0
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3
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1.2k
views
Get back to individual measures to calculate coefficients like the lmFit fucntion (limma package)
limma lmfit weight individual
7.2 years ago stephane.cauchi ▴ 10
0
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2
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1.3k
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Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 7.5 years ago by 50k • written 7.5 years ago by ▴ 10
4
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8
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1.8k
views
Limma for paired and unpaired analysis with adjustment for categorical and continuous variables
limma illumina450k lmfit
updated 7.5 years ago by ★ 7.9k • written 7.5 years ago by • 0
2
votes
4
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1.6k
views
Problem with Agilent microarray data analysis using limma package
limma agilent microarrays lmfit
updated 7.8 years ago by 50k • written 7.8 years ago by • 0
2
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5
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4.2k
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Analysis using a linear model
lmfit
updated 8.5 years ago by 50k • written 8.5 years ago by • 0
3
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6
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2.4k
views
How to get a list of differentialy expressed genes with data from Illumina array?
limma illumina microarray lmfit differential gene expression
updated 8.8 years ago by 65k • written 8.8 years ago by ▴ 10
2
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2
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2.4k
views
limma: Using log2 fold changes as input for a linear model fit
limma logfc lmfit
updated 9.0 years ago by ★ 28k • written 9.0 years ago by ▴ 10
2
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8
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2.2k
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lmFit only deals with numerical values (data matrix object)?
limma lmFit
updated 9.4 years ago by 50k • written 13.1 years ago by ▴ 210
4
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3
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4.7k
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p-values from robust linear model in LIMMA
limma lmFit
updated 9.4 years ago by 50k • written 10.0 years ago by ▴ 40
21 results • Page 1 of 1
Recent ...
Replies
Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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