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Showing :
matrix
•
reset
3
votes
8
replies
2.6k
views
S4Vectors masks/breaks regular Matrix functions
S4Vectors
Matrix
7.3 years ago
peter.kharchenko
▴ 30
4
votes
8
replies
1.3k
views
problem in designing matrix and batch effect
edger
rna-seq
matrix
updated 4.4 years ago by
James W. MacDonald
65k • written 4.4 years ago by
alihakimzadeh73
• 0
3
votes
7
replies
1.4k
views
small dimensions in the matrix of counts from smallRNA using DESEq2
matrix
DESeq2
SmallRNA
dimensions
small
2.7 years ago
andreia
▴ 10
3
votes
7
replies
3.2k
views
Handle missing values in the z-score matrix while plotting heatmap in the ComplexHeatmap
matrix
heatmap
ComplexHeatmap
missing values
R
updated 4.7 years ago by
Zuguang Gu
▴ 260 • written 4.7 years ago by
mohammedtoufiq91
▴ 10
0
votes
7
replies
2.3k
views
Deseq2 no package Matrix found
deseq2
bioconductor
matrix
6.6 years ago
victoria.carla.moris
• 0
10
votes
7
replies
2.5k
views
SummarizedExperiment object from GEOquery obtained GSE
geoquery
summarizedexperiment
GEO
matrix
updated 6.4 years ago by
Sean Davis
21k • written 6.4 years ago by
rbronste
▴ 60
1
vote
7
replies
6.8k
views
scater runUMAP fails with error "function 'as_cholmod_sparse' not provided by package 'Matrix'"
runUMAP
scater
Matrix
updated 11 weeks ago by
Hervé Pagès
16k • written 6 months ago by
inzirio
▴ 10
0
votes
5
replies
1.3k
views
DESeq2 design formula - correlation with ordered variable
DESeq2
design
formula
matrix
updated 6.0 years ago by
Michael Love
42k • written 6.0 years ago by
t.kuilman
▴ 170
0
votes
4
replies
1.7k
views
reading in data and transform it to matrix format
matrix
text
8.8 years ago
Angel
▴ 40
3
votes
4
replies
1.3k
views
Paired analysis (tumor vs normal) at three different conditions with EdgeR
edger
design
matrix
de
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
takumima
▴ 10
2
votes
4
replies
1.1k
views
Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R
python
normalization
matrix
updated 4.7 years ago by
shahryary
▴ 30 • written 4.7 years ago by
mohammedtoufiq91
▴ 10
2
votes
3
replies
1.4k
views
Filtering counts in SummarizedExperiment
diffbind
matrix
summarizedexperiment
rangedCounts
updated 4.6 years ago by
Rory Stark
★ 5.2k • written 4.6 years ago by
rbronste
▴ 60
2
votes
3
replies
1.2k
views
Differential expression error in edgeR - maybe from design matrix?
design
edgeR
matrix
RNA-seq
MDplot
updated 3.0 years ago by
Gordon Smyth
50k • written 3.0 years ago by
Alex
• 0
1
vote
3
replies
2.4k
views
[DiffBind] Memory issues with dba.count()
diffbind
bigmemory
matrix
dba.count
updated 8.8 years ago by
Rory Stark
★ 5.2k • written 8.8 years ago by
enricoferrero
▴ 660
1
vote
2
replies
894
views
How to construct matrix and fit linear model for this microarray?
microarray
dge
matrix
makecontrasts
limma
updated 3.8 years ago by
Gordon Smyth
50k • written 3.8 years ago by
June.
▴ 10
1
vote
2
replies
954
views
want the piece of the matrix I wanted
matrix
updated 5.9 years ago by
Axel Klenk
★ 1.0k • written 5.9 years ago by
yueli7
▴ 20
3
votes
2
replies
1.9k
views
DEXSeq throws a warning - rank-deficient matrix
dexseq
fit
matrix
warning
updated 2.5 years ago by
koushik
• 0 • written 7.3 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
2
replies
1.3k
views
sva :: sva can variable of interest be a matrix itself?
sva
variable of ineterest
matrix
updated 7.5 years ago by
Jeff Leek
▴ 650 • written 7.5 years ago by
reyhan.sonmez
• 0
3
votes
2
replies
797
views
Scoring a seq based on a matrix
matrix
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
ahmad.iut
• 0
1
vote
2
replies
988
views
Which factors to include in design matrix and how to do it in a challenging experimental design
RNAseq
Design
Matrix
2.5 years ago
Barista
• 0
0
votes
1
reply
868
views
[General] compare matrix to vector higher/lower
matrix
updated 8.7 years ago by
andrew.j.skelton73
▴ 370 • written 8.7 years ago by
BenAbflack
• 0
3
votes
1
reply
2.0k
views
Convert Flowframe to matrix
flowcore
fcs
flow cytommetry
matrix
conversion
updated 4.9 years ago by
Jake Wagner
▴ 310 • written 4.9 years ago by
apurva
• 0
22 results • Page
1 of 1
Recent ...
Replies
Answer: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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