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Showing :
monocle
•
reset
1
vote
5
replies
2.6k
views
Monocle causes R session to crash
software error
monocle
updated 6.8 years ago by
kevin.rue
▴ 350 • written 8.5 years ago by
galib36
▴ 10
1
vote
4
replies
2.1k
views
Trajectory analysis for single cell sequencing
single cell
trajectory analysis
tscan
monocle
updated 3.8 years ago by
Aaron Lun
★ 28k • written 3.8 years ago by
lirongrossmann
▴ 40
0
votes
3
replies
1.3k
views
Batch effects and model matrices
deseq2
single cell
monocle
updated 6.9 years ago by
Michael Love
42k • written 6.9 years ago by
bvernot
• 0
5
votes
3
replies
1.4k
views
Setting gene expression thresholds for trajectory analysis using Monocle
monocle
differential gene expression
detectgenes function
Tutorial
5.3 years ago
S.Webb6
▴ 40
1
vote
2
replies
1.7k
views
Error message running DE-test in Monocle
monocle
cummerbund
DE
rnaseq
updated 8.9 years ago by
ksekine
• 0 • written 9.1 years ago by
Jon Bråte
▴ 250
0
votes
2
replies
360
views
Singlecell protein surface (ADT) pseudotime techniques
monocle
slingshot
7 months ago
EspressoKris
▴ 10
0
votes
1
reply
2.4k
views
Pseudotime analysis on bulk RNASeq using monocle
pseudotime
monocle
dimensionality
4.3 years ago
pbachali
▴ 50
0
votes
1
reply
2.9k
views
How to customize the color in 'plot_cell_trajectory' function
scRNA seq
monocle
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
initialqy
• 0
3
votes
1
reply
1.1k
views
Normalizing vs RNA content in scRNAseq data
monocle
scran
updated 6.9 years ago by
Aaron Lun
★ 28k • written 6.9 years ago by
ankur.chakravarthy.10
▴ 40
1
vote
1
reply
208
views
Differentially expressed genes in monocle pseudotime
monocle
updated 4 weeks ago by
Gordon Smyth
50k • written 5 weeks ago by
kthapa
• 0
0
votes
1
reply
1.7k
views
monocle: Error in if (cds@expressionFamily@vfamily %in% c("negbinomial", "negbinomial.size"))
monocle
6.2 years ago
Mehmet Ilyas Cosacak
• 0
0
votes
1
reply
1.2k
views
Monocle group sizes
monocle
7.1 years ago
ribioinfo
▴ 100
0
votes
1
reply
1.5k
views
Converting scater-normalized UMI data to Monocle CellDataSet
scater
scran
umi
monocle
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
supremerulersuraj
• 0
1
vote
1
reply
2.0k
views
Mean Expression Calculation scRNA-seq (All cells or only Expressed Cells)
scrnaseq
monocle
updated 6.0 years ago by
davide risso
▴ 950 • written 6.0 years ago by
chitsazanalex
▴ 10
0
votes
1
reply
3.5k
views
error in monocle.
monocle
updated 7.2 years ago by
driver.ian
• 0 • written 7.2 years ago by
ikwak
• 0
0
votes
1
reply
4.7k
views
monocle error at orderCells
scRNA
monocle
packages
Tutorial
4.7 years ago
444579004
• 0
0
votes
0
replies
1.8k
views
Monocle-strange differential expression results
monocle
differential expression
8.4 years ago
sunil.mangalam
• 0
0
votes
0
replies
2.6k
views
Monocle plot_pseudotime_heatmap : Error in cutree(tree, cutree_n) : elements of 'k' must be between 1 and 3
R
monocle
6.9 years ago
A.H
• 0
0
votes
0
replies
1.5k
views
Documentation of "branch_states" and "branch_labels" arguments
monocle
6.8 years ago
kevin.rue
▴ 350
0
votes
0
replies
1.0k
views
Basic Question: How to get appropriate pDATA structure in monocle from cufflinks/cuffnorm
cufflinks
monocle
7.0 years ago
alexandriapinto1
▴ 10
0
votes
0
replies
1.5k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
8.5 years ago
wanghao1993333
• 0
0
votes
0
replies
468
views
weighting sample group
monocle
SingleCell
DifferentialExpression
20 months ago
Sogand
• 0
22 results • Page
1 of 1
Recent ...
Replies
Answer: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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