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monocle
•
reset
5
votes
3
replies
1.4k
views
Setting gene expression thresholds for trajectory analysis using Monocle
monocle
differential gene expression
detectgenes function
Tutorial
5.3 years ago
S.Webb6
▴ 40
3
votes
1
reply
1.1k
views
Normalizing vs RNA content in scRNAseq data
monocle
scran
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
ankur.chakravarthy.10
▴ 40
1
vote
5
replies
2.6k
views
Monocle causes R session to crash
software error
monocle
updated 6.8 years ago by
kevin.rue
▴ 350 • written 8.5 years ago by
galib36
▴ 10
1
vote
1
reply
206
views
Differentially expressed genes in monocle pseudotime
monocle
updated 4 weeks ago by
Gordon Smyth
50k • written 4 weeks ago by
kthapa
• 0
1
vote
2
replies
1.7k
views
Error message running DE-test in Monocle
monocle
cummerbund
DE
rnaseq
updated 8.8 years ago by
ksekine
• 0 • written 9.1 years ago by
Jon Bråte
▴ 250
1
vote
4
replies
2.1k
views
Trajectory analysis for single cell sequencing
single cell
trajectory analysis
tscan
monocle
updated 3.8 years ago by
Aaron Lun
★ 28k • written 3.8 years ago by
lirongrossmann
▴ 40
1
vote
1
reply
2.0k
views
Mean Expression Calculation scRNA-seq (All cells or only Expressed Cells)
scrnaseq
monocle
updated 6.0 years ago by
davide risso
▴ 950 • written 6.0 years ago by
chitsazanalex
▴ 10
0
votes
0
replies
2.6k
views
Monocle plot_pseudotime_heatmap : Error in cutree(tree, cutree_n) : elements of 'k' must be between 1 and 3
R
monocle
6.8 years ago
A.H
• 0
0
votes
0
replies
1.5k
views
Documentation of "branch_states" and "branch_labels" arguments
monocle
6.8 years ago
kevin.rue
▴ 350
0
votes
1
reply
1.7k
views
monocle: Error in if (cds@expressionFamily@vfamily %in% c("negbinomial", "negbinomial.size"))
monocle
6.2 years ago
Mehmet Ilyas Cosacak
• 0
0
votes
1
reply
1.5k
views
Converting scater-normalized UMI data to Monocle CellDataSet
scater
scran
umi
monocle
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
supremerulersuraj
• 0
0
votes
1
reply
4.7k
views
monocle error at orderCells
scRNA
monocle
packages
Tutorial
4.7 years ago
444579004
• 0
0
votes
1
reply
2.4k
views
Pseudotime analysis on bulk RNASeq using monocle
pseudotime
monocle
dimensionality
4.3 years ago
pbachali
▴ 50
0
votes
1
reply
2.9k
views
How to customize the color in 'plot_cell_trajectory' function
scRNA seq
monocle
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
initialqy
• 0
0
votes
0
replies
467
views
weighting sample group
monocle
SingleCell
DifferentialExpression
20 months ago
Sogand
• 0
0
votes
2
replies
356
views
Singlecell protein surface (ADT) pseudotime techniques
monocle
slingshot
7 months ago
EspressoKris
▴ 10
0
votes
0
replies
1.5k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
8.5 years ago
wanghao1993333
• 0
0
votes
0
replies
1.8k
views
Monocle-strange differential expression results
monocle
differential expression
8.4 years ago
sunil.mangalam
• 0
0
votes
1
reply
3.5k
views
error in monocle.
monocle
updated 7.2 years ago by
driver.ian
• 0 • written 7.2 years ago by
ikwak
• 0
0
votes
1
reply
1.1k
views
Monocle group sizes
monocle
7.1 years ago
ribioinfo
▴ 100
0
votes
0
replies
1.0k
views
Basic Question: How to get appropriate pDATA structure in monocle from cufflinks/cuffnorm
cufflinks
monocle
7.0 years ago
alexandriapinto1
▴ 10
0
votes
3
replies
1.3k
views
Batch effects and model matrices
deseq2
single cell
monocle
updated 6.9 years ago by
Michael Love
42k • written 6.9 years ago by
bvernot
• 0
22 results • Page
1 of 1
Recent ...
Replies
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
Comment: European Bioconductor Conference 2023 planning
by
angelaesper43
• 0
@Maria Doyle[sexdolltech][1]Hosting EuroBioC provides an excellent opportunity to showcase Bioconductor and computational biology research …
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards
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Popular Question
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Ken C
• 0
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to
Johannes Rainer
★ 2.0k
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to
Chris
▴ 10
Popular Question
to
Guido Hooiveld
★ 4.0k
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to
Michael Love
42k
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