Showing : proteomics • reset
3
votes
10
replies
557
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Extremely small p-values using Limma for proteomic data
Proteomics limma
updated 19 days ago by 66k • written 22 days ago by • 0
0
votes
3
replies
254
views
Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 27 days ago by ★ 4.2k • written 28 days ago by • 0
0
votes
0
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273
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Job: Bioinformatics Spatial Omics and Proteomics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
Proteomics JobPosting SingleCell Spatial SpatialExperiment
12 weeks ago Peter Hickey ▴ 740
0
votes
1
reply
227
views
analysis of overexpressed proteins in metaproteomes
Proteomics ProteoMM ProteomicsWorkflow Proteome
written 6 months ago by ▴ 10
0
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0
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268
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Normalising processed Proteomics data in R
Bioconductor Proteomics
6 months ago Joshua • 0
1
vote
4
replies
788
views
How to find differentially expressed proteins from multiple conditions (>2) using proDA?
Proteomics proDA MultipleComparison
9 months ago t.b.n.nguyen-9 • 0
1
vote
0
replies
468
views
Differential abundance analysis of phosphoproteomics data with multiple time points and conditions
Proteomics DifferentialRegulation limma
9 months ago svlachavas ▴ 830
0
votes
5
replies
779
views
R for Mass Spectrometry: PSMatch package won't read .mzid file exported from ProteinPilot?
RforProteomics Proteomics ProteomicsWorkflow
updated 10 months ago by 1.6k • written 10 months ago by • 0
0
votes
1
reply
648
views
R for Mass Spectrometry: Precursor Scan Number lost when converting .wiff to .mzML?
Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData
updated 10 months ago by 1.6k • written 10 months ago by • 0
0
votes
2
replies
856
views
Proteomics data with NA values
Proteomics ProteoMM ProteomicsWorkflow
updated 10 months ago by • 0 • written 12 months ago by • 0
0
votes
2
replies
1.4k
views
biomaRt to match UniProt protein IDs with protein names
Proteomics UniProtKeywords
updated 14 months ago by 66k • written 14 months ago by • 0
0
votes
0
replies
679
views
Job: Open position in the CBIO lab: single-cell proteomics
Proteomics SingleCell JobPosting MassSpectrometry
14 months ago Laurent Gatto 1.6k
0
votes
0
replies
685
views
Job: Open position in the CBIO lab: spatial proteomics and PTMs
pRoloc proteomics Spatial Proteomics MassSpectrometry
15 months ago Laurent Gatto 1.6k
0
votes
0
replies
534
views
News: Course - R/BIOCONDUCTOR FOR MASS SPECTROMETRY AND PROTEOMICS
Proteomics R Bioconductor MassSpectrometry
15 months ago info ▴ 10
1
vote
3
replies
1.2k
views
Adding ellipse in PCAtools biplot
Biplot FactoMineR proteomics PCAtools ellipse
updated 16 months ago by ★ 3.9k • written 16 months ago by • 0
1
vote
0
replies
594
views
Problem with VSN: Error in vsnML(sv) : L-BFGS-B needs finite values of 'fn'
justvsn vsn Normalization vsn2 Proteomics
16 months ago Arend ▴ 10
3
votes
3
replies
1.4k
views
Limma repeated-measures model: Partial NA coefficients
Proteomics limma repeated-measures
updated 17 months ago by 50k • written 17 months ago by • 0
0
votes
0
replies
546
views
A question about GWENA R/Bioconductor package
proteomics GWENA Proteomics WGCNA
18 months ago Abdullah • 0
0
votes
0
replies
734
views
Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer bioinformatics proteomics genomics phd
18 months ago DKFZ International PhD Program ▴ 10
1
vote
3
replies
959
views
Proteomics-time series with repeated measures
Proteomics limma repeatedmeasures TimeSeriesExperiment
19 months ago proteome_AO • 0
0
votes
5
replies
1.1k
views
Inquiry about suitable package for proteomics study design
Proteomics design
updated 19 months ago by • 0 • written 19 months ago by • 0
0
votes
0
replies
583
views
Outliers
Proteomics Proteome
updated 20 months ago by ★ 4.2k • written 20 months ago by • 0
0
votes
0
replies
503
views
Finding DEGs between two different datasets using limma
Proteomics limma proteomi
21 months ago mfaleevs • 0
0
votes
3
replies
953
views
Design and contrast matrices for analyzing the effect of two factors of interest on protein expression, controlling for factors and covariates not of…
limma Proteomics ProteomicsWorkflow
updated 21 months ago by 50k • written 21 months ago by • 0
1
vote
0
replies
794
views
Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
22 months ago Andy Lynch ▴ 120
0
votes
0
replies
781
views
About normalization of the datasets from Harmonized TCGA data
TCGAbiolinks Proteomics GENOMICS bioinformatics
22 months ago qiz218591 • 0
2
votes
5
replies
1.8k
views
proteomics analysis
Proteomics analysis
updated 22 months ago by ▴ 90 • written 23 months ago by • 0
2
votes
1
reply
1.1k
views
Extremely low P-values when using Limma on high sample size proteomics data
limma Proteomics
updated 2.1 years ago by 66k • written 2.1 years ago by • 0
1
vote
2
replies
960
views
Questions about msqrob2: raw vs LFQ intensities, model design with blocking
msqrob2 ProteomicsWorkflow proteomics
updated 24 months ago by 50k • written 2.1 years ago by ▴ 10
1
vote
0
replies
758
views
Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
2.1 years ago DKFZ International PhD Program ▴ 10
0
votes
0
replies
766
views
ProteoMM analysis with two replicates
shotgunproteomics Proteome proteomics Proteomics ProteoMM
2.2 years ago ary.lech ▴ 10
0
votes
2
replies
1.8k
views
Limma Differential Analysis on Proteomics data
Proteomics limma Limma DifferentialExpression
updated 2.3 years ago by 50k • written 2.3 years ago by • 0
0
votes
0
replies
780
views
Job: Tenure-track Group Leader Positions in Computational Biology and Biological Chemistry
bioinformatics genomics proteomics biologicalchemistry sequencing
2.3 years ago Robert Castelo ★ 3.3k
0
votes
1
reply
1.9k
views
limma/voom for protein intensity data
limma proteomics voom
updated 2.7 years ago by ★ 4.2k • written 2.7 years ago by ▴ 70
0
votes
1
reply
769
views
How to pull-down gene/protein names from the database search, using R ?
proteinProfiles ProteomicsWorkflow ProteomicsAnnotationHubData Proteomics
updated 2.7 years ago by 50k • written 2.8 years ago by • 0
0
votes
5
replies
1.1k
views
In need of linear modeling help for differential expression (proteomics)
Proteomics limma vsn
updated 2.8 years ago by 50k • written 2.8 years ago by • 0
0
votes
0
replies
929
views
How to handle the imputation and normalisation?
Proteomics DEP limma
2.8 years ago barrypraveen • 0
0
votes
1
reply
1.2k
views
How to remove batch effect on DEP protemics package?
Proteomics DEP MassSpectrometryData
updated 2.9 years ago by • 0 • written 2.9 years ago by • 0
0
votes
0
replies
1.8k
views
what is the difference between iBAQ or LFQ?
Proteomics DEP limma
written 2.9 years ago by • 0
0
votes
4
replies
1.3k
views
How to analyse RNA-based protein pulldown mass spectrometry data
Proteomics limma MassSpectrometry
updated 13 months ago by 50k • written 2.9 years ago by • 0
5
votes
6
replies
3.9k
views
Differential protein/biomarker expression using limma: is that possible?
Proteomics NPX limma
updated 4 months ago by • 0 • written 3.2 years ago by ▴ 10
0
votes
0
replies
957
views
Limma design multi-level experiment with 3 time points
R proteomics limma
3.2 years ago ellen2270 • 0
6
votes
6
replies
1.7k
views
limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 3.2 years ago by 50k • written 3.2 years ago by ▴ 10
0
votes
4
replies
1.1k
views
DEP - Run filter_missval() with a threshold ranging from 0 to 3
proteomics DEP
3.2 years ago rina ▴ 30
0
votes
0
replies
974
views
Job: Tenure-track Group Leader Position in Computational Biology
bioinformatics sequencing barcelona proteomics
3.3 years ago Robert Castelo ★ 3.3k
2
votes
1
reply
3.2k
views
Convert UniProt Entry Names into Gene Symbols
Proteomics ProteomicsWorkflow UniProt.ws
updated 3.3 years ago by 66k • written 3.3 years ago by ★ 1.5k
0
votes
0
replies
1.1k
views
Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
3.4 years ago Laura • 0
1
vote
2
replies
1.2k
views
calculate theoretical isotope distribution give the AA sequence
Metabolomics proteomics MassSpectrometry
3.4 years ago Oliver • 0
0
votes
3
replies
1.1k
views
Why I can not install rTANDEM?
MassSpectrometry Proteomics mzR
3.5 years ago Gilad • 0
1
vote
2
replies
1.1k
views
error in installation of 'org.Hs.eg.db'
proteomics GenomicSequence
updated 3.5 years ago by ▴ 90 • written 3.5 years ago by • 0
50 results • Page 1 of 1
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Comment: How to run allelic imbalance in apeglm by parayod376 • 0
Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
FYI, I emailed Benilton and he says he's working on a fix, so stay tuned!
Answer: Error in render R qmd document (could not find function "process") by James W. MacDonald 66k
If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
For some reason, that's still not working for me on command line. I ended up figuring out another way around, though, by converting the g…
Votes
Reduce the number of nodes appear in the cnetplot of clusterprofiler
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
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