Bioconductor SimpleSingleCell

Showing : simpleSingleCell • reset

votes

replies

2.0k

views

DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 3.6 years ago by Aaron Lun ★ 28k • written 4.7 years ago by C T ▴ 140

votes

replies

1.2k

views

simpleSingleCell

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by Angelos Armen • 0

vote

681

views

simpleSingleCell

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by Angelos Armen • 0

votes

4.5k

views

DropletUtils EmptyDrops simpleSingleCell

updated 21 months ago by Stefano Mangiola ▴ 10 • written 4.8 years ago by shbrief ▴ 20

vote

replies

1.7k

views

scran simpleSingleCell

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by Angelos Armen • 0

votes

replies

2.8k

views

limma edgeR simplesingleCell scran scater

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by Bogdan ▴ 670

votes

replies

1.6k

views

SingleCellExperiment scran limma simpleSingleCell

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by Matt Mulé • 0

vote

replies

1.7k

views

DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by Steve Pederson ▴ 170

votes

replies

2.4k

views

singlecellexperiment dropletutils simplesinglecell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Peter Hickey ▴ 740

votes

859

views

workflows simplesinglecell

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by es.azadian • 0

votes

957

views

simplesinglecell

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by Xingyu • 0

vote

replies

1.8k

views

scater singlecellexperiment simplesinglecell

updated 6.3 years ago by Aaron Lun ★ 28k • written 6.3 years ago by Xingyu • 0

votes

replies

3.2k

views

scater simpleSingleCell workflows

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by sandmann.t ▴ 70

13 results • Page 1 of 1

Recent ...

Replies

Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0

thank you!

Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

coldata_rat <- data.frame(conditions=..., batch=...)

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0

Thank you all for your comments. I will follow your suggestions.

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…

Votes

biomaRt not working - lazy table error

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Awards • All