Bioconductor SimpleSingleCell

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4.5k

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DropletUtils EmptyDrops simpleSingleCell

updated 21 months ago by Stefano Mangiola ▴ 10 • written 4.8 years ago by shbrief ▴ 20

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3.2k

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scater simpleSingleCell workflows

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by sandmann.t ▴ 70

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2.8k

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limma edgeR simplesingleCell scran scater

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by Bogdan ▴ 670

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2.4k

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singlecellexperiment dropletutils simplesinglecell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Peter Hickey ▴ 740

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2.0k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 3.6 years ago by Aaron Lun ★ 28k • written 4.7 years ago by C T ▴ 140

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1.8k

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scater singlecellexperiment simplesinglecell

updated 6.3 years ago by Aaron Lun ★ 28k • written 6.3 years ago by Xingyu • 0

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1.7k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by Steve Pederson ▴ 170

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1.7k

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scran simpleSingleCell

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by Angelos Armen • 0

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1.6k

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SingleCellExperiment scran limma simpleSingleCell

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by Matt Mulé • 0

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1.2k

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simpleSingleCell

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by Angelos Armen • 0

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957

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simplesinglecell

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by Xingyu • 0

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859

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workflows simplesinglecell

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by es.azadian • 0

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681

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simpleSingleCell

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by Angelos Armen • 0

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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0

thank you!

Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

coldata_rat <- data.frame(conditions=..., batch=...)

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0

Thank you all for your comments. I will follow your suggestions.

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…

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biomaRt not working - lazy table error

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

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