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starr
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how to analyse chip-chip on normalized data without bpmap file or how to select bpmap file for your data(data downloaded from NCBI geo)
starr
chip-chip
7.1 years ago
sudhirjadhao2009
• 0
0
votes
4
replies
1.2k
views
Two color Nucleosomes ChIP-ChIP data analysis using Ringo package.
limma
ringo
starr
8.8 years ago • updated 8.7 years ago
ashubiochem
• 0
0
votes
1
reply
1.4k
views
Ringo Plots Only Partially Made
Ringo
affy
tilingarray
plot
starr
8.9 years ago
bruce.moran
▴ 30
0
votes
1
reply
1.0k
views
Starr package: cmarrt.ma error
Starr
Starr
updated 10.1 years ago by
Julie Zhu
★ 4.3k • written 10.1 years ago by
Paul
▴ 10
0
votes
0
replies
959
views
Starr package: cmarrt.ma error
Starr
Starr
10.2 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.1k
views
readCelFile function in Starr is crashing R
Starr
Starr
updated 12.5 years ago by
Kasper Daniel Hansen
★ 6.5k • written 12.5 years ago by
Guest User
★ 13k
0
votes
1
reply
839
views
help with Starr
GO
Starr
GO
Starr
updated 13.0 years ago by
Martin Morgan
25k • written 13.0 years ago by
Yongde Bao
▴ 170
0
votes
4
replies
1.3k
views
Reading GFF using Starr
Starr
Starr
updated 13.2 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 13.2 years ago by
Feseha Abebe-Akele
▴ 30
0
votes
1
reply
1.6k
views
tilingArray getting started questions
GO
Yeast
tilingArray
Starr
GO
Yeast
tilingArray
Starr
13.7 years ago
Noah Dowell
▴ 410
0
votes
3
replies
1.5k
views
ChIP-chip sequence bias not removed
Normalization
vsn
Starr
Normalization
vsn
Starr
updated 13.8 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 13.8 years ago by
Edwin Groot
▴ 230
0
votes
6
replies
1.6k
views
Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast
ChIPpeakAnno
Starr
Yeast
ChIPpeakAnno
Starr
updated 14.0 years ago by
Julie Zhu
★ 4.3k • written 14.0 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
907
views
Starr - MAT normalization
Normalization
Starr
Normalization
Starr
updated 14.0 years ago by
Raphael Gottardo
▴ 40 • written 14.0 years ago by
Hans-Ulrich Klein
▴ 330
0
votes
1
reply
898
views
Ringo/Starr getProfiles function
Annotation
Starr
Annotation
Starr
updated 14.4 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 14.4 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
939
views
Ringo/Starr getProfiles function
biomaRt
Ringo
Starr
biomaRt
Ringo
Starr
updated 14.4 years ago by
Wolfgang Huber
★ 13k • written 14.5 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
816
views
Please Help with Starr Package
Normalization
Starr
Normalization
Starr
updated 14.5 years ago by
Martin Morgan
25k • written 14.5 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.2k
views
Help with Oligo Package: Extracting and Graphing
Transcription
Normalization
Yeast
probe
affy
graph
tilingArray
oligo
pdInfoBuilder
Starr
updated 14.5 years ago by
Tobias Straub
▴ 430 • written 14.5 years ago by
Noah Dowell
▴ 410
16 results • Page
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Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
65k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat
by
minardsmitha
▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons
by
boczniak767
▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
We have some text about this particular question in the Frequently Asked Questions (FAQ) part of the software vignette.
Answer: How to run allelic imbalance in apeglm
by
Michael Love
42k
You can put 1 / 1 for the ratio when you are missing counts and then set the weight for that matrix cell to 1e-6. Let me know if that's …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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