Bioconductor Txdb.hsapiens.ucsc.hg38.knowngene

Showing : txdb.hsapiens.ucsc.hg38.knowngene • reset

votes

replies

1.5k

views

MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

14 months ago davidhillis • 0

votes

replies

698

views

microRNA TxDb.Hsapiens.UCSC.hg38.knownGene

16 months ago Lluís Revilla Sancho ▴ 730

votes

3.8k

views

install TxDb.Hsapiens.UCSC.hg38.knownGene

2.2 years ago Theresa ▴ 20

votes

replies

1.4k

views

TxDb.Hsapiens.UCSC.hg38.knownGene

updated 2.4 years ago by Hervé Pagès 16k • written 2.4 years ago by BioEpi • 0

votes

1.7k

views

TxDb.Hsapiens.UCSC.hg38.knownGene

updated 3.2 years ago by James W. MacDonald 65k • written 3.2 years ago by lukijanczukpawel • 0

votes

replies

1.0k

views

annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 4.3 years ago by kayla.interdonato ▴ 160 • written 4.3 years ago by jam526 • 0

votes

replies

1.0k

views

TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.3 years ago by shepherl 3.9k • written 4.3 years ago by bernatgel ▴ 150

votes

829

views

HLA TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.4 years ago by kayla.interdonato ▴ 160 • written 4.4 years ago by Kamil Slowikowski ▴ 30

votes

replies

2.8k

views

TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.ensGene

updated 4.6 years ago by James W. MacDonald 65k • written 4.6 years ago by Aditya ▴ 160

votes

replies

2.1k

views

TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

5.0 years ago Ruichao.Zeng ▴ 20

vote

replies

2.8k

views

txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db

updated 6.4 years ago by Simon Anders ★ 3.7k • written 6.4 years ago by Mark Dunning ★ 1.1k

vote

replies

1.4k

views

s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene

6.6 years ago Leonardo Collado Torres ★ 1.0k

votes

replies

2.6k

views

annotation txdb.hsapiens.ucsc.hg38.knowngene bug

7.6 years ago shilin.zhao ▴ 40

votes

replies

3.6k

views

txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation

8.1 years ago enricoferrero ▴ 660

14 results • Page 1 of 1

Recent ...

Replies

Answer: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 65k

Unless you think the different lines or tissues will have very different within-group variances, you should just analyze together and make …

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments? by James W. MacDonald 65k

It appears that batch is orthogonal to the treatment, so you can just fit a batch effect in your model.

Answer: Control group between 2 batches have different expression in RNAseq data by James W. MacDonald 65k

Since batch is orthogonal to the treatment, you just add a batch factor to your model.

Answer: Subsetting RNAseq data | voomaByGroup() by Anna • 0

Hi Gordon. Thank you so much. Your reply is extremely helpful, and I feel more confident moving forward with the analysis. Also, very inte…

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

edgeR used a prior count which stabilizes LFC while DESeq2 does not. Note that the SE are larger in these cases so you don't have experime…

Votes

Answer: Subsetting RNAseq data | voomaByGroup()

biomaRt not working - lazy table error

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Awards • All