Bioconductor Txdb.hsapiens.ucsc.hg38.knowngene

Showing : txdb.hsapiens.ucsc.hg38.knowngene • reset

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

14 months ago • updated 13 months ago davidhillis • 0

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680

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microRNA TxDb.Hsapiens.UCSC.hg38.knownGene

16 months ago Lluís Revilla Sancho ▴ 730

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3.8k

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install TxDb.Hsapiens.UCSC.hg38.knownGene

2.2 years ago Theresa ▴ 20

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1.3k

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 2.4 years ago by Hervé Pagès 16k • written 2.4 years ago by BioEpi • 0

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1.7k

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 3.2 years ago by James W. MacDonald 65k • written 3.2 years ago by lukijanczukpawel • 0

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 4.2 years ago by kayla.interdonato ▴ 160 • written 4.2 years ago by jam526 • 0

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TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.3 years ago by shepherl 3.9k • written 4.3 years ago by bernatgel ▴ 150

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824

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HLA TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.3 years ago by kayla.interdonato ▴ 160 • written 4.3 years ago by Kamil Slowikowski ▴ 30

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2.7k

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TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.ensGene

updated 4.6 years ago by James W. MacDonald 65k • written 4.6 years ago by Aditya ▴ 160

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TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

5.0 years ago Ruichao.Zeng ▴ 20

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txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db

updated 6.4 years ago by Simon Anders ★ 3.7k • written 6.4 years ago by Mark Dunning ★ 1.1k

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s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene

6.6 years ago Leonardo Collado Torres ★ 1.0k

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2.6k

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annotation txdb.hsapiens.ucsc.hg38.knowngene bug

7.6 years ago shilin.zhao ▴ 40

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3.5k

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txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation

8.1 years ago enricoferrero ▴ 660

14 results • Page 1 of 1

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Comment: Extremely small p-values using Limma for proteomic data by Abbey • 0

This is the code. The only part I changed was adding the contrasts.fit as you suggested. Thanks for taking a look! ``` # Load necessary …

Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

Probably. I would not expect such large fold changes. But without seeing your code, who knows?

Comment: Extremely small p-values using Limma for proteomic data by Abbey • 0

Thank you James! This worked to fix the p-values. However, the plot still looks one-sided... any idea what's going on with the left side?…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

That ll be helpful. Thank you.

Comment: Log-cpm values from limma by Shaimaa Gamal • 0

I have performed RUVg correction and extracted W, factors of unwanted variation. According to limma guide, > In the limma approach to RNA…

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Answer: Extremely small p-values using Limma for proteomic data

Bioconductor 3.19 is Released!

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

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