Bioconductor Tximport

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206

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tximport edgeR Normalization

8 weeks ago • updated 7 weeks ago Marianna ▴ 20

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230

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tximport

updated 9 weeks ago by Michael Love 42k • written 9 weeks ago by SG • 0

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281

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DESeq2 tximport

updated 11 weeks ago by ATpoint ★ 4.2k • written 11 weeks ago by hemantcnaik • 0

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1.3k

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STAR tximport RNASeq DESeq2

updated 5 months ago by swbarnes2 ★ 1.4k • written 5 months ago by Bo • 0

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380

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rsem tximport

updated 5 months ago by ATpoint ★ 4.2k • written 5 months ago by apolitics • 0

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601

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tximport DESeq2

updated 6 months ago by James W. MacDonald 66k • written 6 months ago by mckinlee.salazar • 0

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463

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salmon tximport deseq2

updated 7 months ago by Michael Love 42k • written 7 months ago by Kayleigh • 0

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2.0k

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tximport

updated 7 months ago by Abhishek • 0 • written 7 months ago by RLiu ▴ 40

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853

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tximport edgeR

written 9 months ago by Vitor • 0

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1.5k

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tximport DESeq2

updated 8 months ago by Michael Love 42k • written 9 months ago by Christian • 0

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954

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tximport edgeR

updated 9 months ago by Michael Love 42k • written 9 months ago by hanc • 0

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1.6k

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salmon IsoformSwitchAnalyzeR tximport RNASeqData

updated 10 months ago by k.vitting.seerup ▴ 120 • written 10 months ago by elva.gypsophila ▴ 10

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1.2k

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tximport tximportData DESeq2

11 months ago • updated 10 months ago Ndimensional ▴ 20

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697

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tximport tximportData

updated 3 months ago by Matteo • 0 • written 11 months ago by barrypraveen • 0

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1.8k

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salmon edgeR tximport nf-core gene_counts

updated 5 weeks ago by i.atanasoai • 0 • written 15 months ago by mohammedtoufiq91 ▴ 10

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1.4k

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DESeq2 tximport counts Salmon

updated 3 months ago by Michael Love 42k • written 17 months ago by kiqbal • 0

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2.9k

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tximport

updated 10 months ago by Michael Love 42k • written 2.6 years ago by nicolette.sipperly • 0

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tximport dtu salmon TPM rnaseqDTU

written 5.2 years ago by fiona.dick91 ▴ 60

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bioconductor tximport rnaseq R

updated 10 weeks ago by Eva • 0 • written 7.7 years ago by ctl • 0

19 results • Page 1 of 1

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Answer: Counter-directional LFC shrinkage by swbarnes2 ★ 1.4k

The y axes in those plots are logged. The average for condition1 is going to be higher than condition2 because of the very high outliers. …

Comment: Cannot install oligo on Fedora by Guido Hooiveld ★ 4.0k

Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…

Comment: Error in gseDO function by Guido Hooiveld ★ 4.0k

I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…

Comment: Counter-directional LFC shrinkage by ATpoint ★ 4.2k

Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.

Votes

A: DESeq2: add annotations (from data frame) to DESeqDataSet

Answer: Error in gseDO function

Comment: what the test method for enrichGO in clusterProfiler?

A: Comparison between two different group's pathway analysis results

DiffBind Batch Effect

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Popular Question to Dario Strbenac ★ 1.5k