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Answer: Answer: Typo in the help of lmFit()
9 months ago Gordon Smyth 53k
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Answer: Answer: Limma suqeezeVar
9 months ago Gordon Smyth 53k
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Answer: Answer: Limma trend with limpa
9 months ago Gordon Smyth 53k
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Comment: Comment: Check removeBatchEffect effectiveness
9 months ago Gordon Smyth 53k
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5.7k
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Comment: Comment: limma::voom vs edgeR::voomLmFit - when to use?
9 months ago Gordon Smyth 53k
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6.9k
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Comment: Comment: How to load scRNA-seq data from GEO
9 months ago Gordon Smyth 53k
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6.9k
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Comment: Comment: How to load scRNA-seq data from GEO
9 months ago Gordon Smyth 53k
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3.6k
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Comment: Comment: limma correction for tumor purity
9 months ago Gordon Smyth 53k
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1.4k
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Comment: Comment: Dealing with heteroscedascity in limma
9 months ago Gordon Smyth 53k
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6.9k
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Comment: Comment: How to load scRNA-seq data from GEO
9 months ago Gordon Smyth 53k
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3.6k
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Answer: Answer: limma correction for tumor purity
9 months ago Gordon Smyth 53k
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1.4k
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Answer: Answer: Dealing with heteroscedascity in limma
9 months ago Gordon Smyth 53k
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3.6k
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Comment: Comment: Check removeBatchEffect effectiveness
9 months ago Gordon Smyth 53k
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6.9k
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Answer: Answer: How to load scRNA-seq data from GEO
10 months ago Gordon Smyth 53k
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4.3k
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Comment: Comment: parameters of filterByExpr
10 months ago Gordon Smyth 53k
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4.3k
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Comment: Comment: parameters of filterByExpr
10 months ago Gordon Smyth 53k
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4.3k
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Answer: Answer: parameters of filterByExpr
10 months ago Gordon Smyth 53k
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3.6k
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Answer: Answer: Check removeBatchEffect effectiveness
10 months ago Gordon Smyth 53k
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803
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Answer: Answer: ROAST for small sets
10 months ago Gordon Smyth 53k
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3.3k
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Comment: Comment: edgeR::cpm() results in negative values from raw counts of 0
10 months ago Gordon Smyth 53k
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2
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3.3k
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Answer: Answer: edgeR::cpm() results in negative values from raw counts of 0
10 months ago Gordon Smyth 53k
2
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3.3k
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Comment: Comment: edgeR::cpm() results in negative values from raw counts of 0
10 months ago Gordon Smyth 53k
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2.1k
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Answer: Answer: how to use `arrayWeightsQuick()`?
10 months ago Gordon Smyth 53k
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2.1k
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Comment: Comment: how to use `arrayWeightsQuick()`?
10 months ago Gordon Smyth 53k
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1.2k
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Answer: Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR
10 months ago Gordon Smyth 53k
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1.7k
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Answer: Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
11 months ago Gordon Smyth 53k
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1.4k
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Comment: Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
11 months ago Gordon Smyth 53k
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1.4k
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Answer: Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
11 months ago Gordon Smyth 53k
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0
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532
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Answer: Answer: Is it possible to model DNA methylation as a dose response in edgeR?
12 months ago Gordon Smyth 53k
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1.8k
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Comment: Comment: Use of limma R package with targeted proteomics for DE analysis
12 months ago Gordon Smyth 53k
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761
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Answer: Answer: cameraPR() non directional test
12 months ago Gordon Smyth 53k
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1.8k
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Answer: Answer: Use of limma R package with targeted proteomics for DE analysis
12 months ago Gordon Smyth 53k
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1.2k
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Answer: Answer: To count or not to count multi-overlapping reads?
12 months ago Gordon Smyth 53k
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1.2k
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Answer: Answer: EdgeR Biological CVs
13 months ago Gordon Smyth 53k
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1.1k
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Answer: Answer: Differential variability modelling with vst() expression
13 months ago Gordon Smyth 53k
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1.8k
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Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
14 months ago Gordon Smyth 53k
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867
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Answer: Answer: Mean variance curve troubleshoot filtering
14 months ago Gordon Smyth 53k
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1.2k
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Comment: Comment: How do I fix an odd voom plot in a combined dataset?
14 months ago Gordon Smyth 53k
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1.8k
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Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
14 months ago Gordon Smyth 53k
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1.8k
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Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
14 months ago Gordon Smyth 53k
2
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1
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1.2k
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Answer: Answer: How do I fix an odd voom plot in a combined dataset?
14 months ago Gordon Smyth 53k
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1
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1.8k
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Answer: Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
14 months ago Gordon Smyth 53k
0
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0
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4.2k
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Comment: Comment: edgeR + tximport: calcNormFactors and the usage of offsets
14 months ago Gordon Smyth 53k
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1
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915
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Answer: Answer: Cross-validation with multiple control subgroups in limma
14 months ago Gordon Smyth 53k
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0
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1.8k
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Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
14 months ago Gordon Smyth 53k
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1
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1.8k
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Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
14 months ago Gordon Smyth 53k
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1
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1.8k
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Answer: Answer: Normalizing batch effects using technical replicates for DGE analysis between tw
14 months ago Gordon Smyth 53k
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0
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1.7k
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Answer: Answer: Limma - using both array and spot weights in lmFit
14 months ago Gordon Smyth 53k
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2.8k
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Comment: Comment: Feature Counts - potential bug with outfile.jcounts
14 months ago Gordon Smyth 53k
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2
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2.8k
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Answer: Answer: Feature Counts - potential bug with outfile.jcounts
14 months ago Gordon Smyth 53k
5,346 results • Page 3 of 107
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