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Answer: Answer: Bulk RNAseq analysis for
14 hours ago Gordon Smyth 53k
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Comment: Comment: using limma trend workflow in CAMERA
5 days ago Gordon Smyth 53k
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503
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Comment: Comment: limpa analysis advice
13 days ago • updated 12 days ago Gordon Smyth 53k
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194
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Answer: Answer: Array weights in dpcDE
14 days ago Gordon Smyth 53k
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503
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Comment: Comment: limpa analysis advice
14 days ago Gordon Smyth 53k
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1
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835
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Comment: Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
17 days ago • updated 14 days ago Gordon Smyth 53k
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835
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Comment: Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
18 days ago Gordon Smyth 53k
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185
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Answer: Answer: Bile acid analysis with limpa
18 days ago • updated 15 days ago Gordon Smyth 53k
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575
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Comment: Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
19 days ago Gordon Smyth 53k
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1
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835
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Answer: Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2
19 days ago • updated 18 days ago Gordon Smyth 53k
0
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0
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575
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Comment: Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
19 days ago Gordon Smyth 53k
1
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1
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503
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Comment: Comment: limpa analysis advice
22 days ago Gordon Smyth 53k
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1
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503
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Answer: Answer: limpa analysis advice
24 days ago Gordon Smyth 53k
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366
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Answer: Answer: When to use edgeR or limma
25 days ago • updated 24 days ago Gordon Smyth 53k
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0
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575
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Comment: Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
25 days ago Gordon Smyth 53k
0
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2
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575
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Answer: Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
26 days ago • updated 25 days ago Gordon Smyth 53k
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1
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364
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Comment: Comment: Question about the filterByExpr function inputs in edgeR
26 days ago Gordon Smyth 53k
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157
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Comment: Comment: Development of MSstat workflow to analyze DIA time series data
27 days ago Gordon Smyth 53k
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364
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Answer: Answer: Question about the filterByExpr function inputs in edgeR
27 days ago Gordon Smyth 53k
0
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0
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476
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Comment: Comment: Clarification on counting in Rsubread (featureCounts)
27 days ago Gordon Smyth 53k
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0
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476
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Comment: Comment: Clarification on counting in Rsubread (featureCounts)
28 days ago Gordon Smyth 53k
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1
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357
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Answer: Answer: Combining two proteomics datasets with limpa
4 weeks ago Gordon Smyth 53k
0
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0
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353
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Comment: Comment: How to do differential expresion across time serise with edgeR?
5 weeks ago Gordon Smyth 53k
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353
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Answer: Answer: How to do differential expresion across time serise with edgeR?
5 weeks ago Gordon Smyth 53k
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1
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351
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Answer: Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
5 weeks ago Gordon Smyth 53k
4
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2
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592
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Answer: Answer: Limma-voom sample weights and impact on DEG numbers
6 weeks ago Gordon Smyth 53k
0
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0
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337
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Comment: Comment: segfault in edgeR glmQLFit
7 weeks ago Gordon Smyth 53k
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1
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337
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Answer: Answer: segfault in edgeR glmQLFit
7 weeks ago Gordon Smyth 53k
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1
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653
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Comment: Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
7 weeks ago Gordon Smyth 53k
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1
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653
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Answer: Answer: How does contrasts.fit do in limma to extract comparisons with a model having in
7 weeks ago Gordon Smyth 53k
0
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0
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293
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Answer: Answer: PTM analysis in LIMPA
9 weeks ago • updated 25 days ago Gordon Smyth 53k
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0
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1.3k
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Answer: Answer: two questions about limma
10 weeks ago Gordon Smyth 53k
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0
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523
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Comment: Comment: Large logFC but somewhat high FDR
11 weeks ago Gordon Smyth 53k
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1
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1.3k
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Answer: Answer: p.adjust BH Question
11 weeks ago Gordon Smyth 53k
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1
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523
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Answer: Answer: Large logFC but somewhat high FDR
11 weeks ago Gordon Smyth 53k
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1
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308
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Answer: Answer: limpa - drivers for unusually high standard error?
11 weeks ago Gordon Smyth 53k
2
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1
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337
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Answer: Answer: Identifying differentially expressed genes in individual samples from a large co
11 weeks ago Gordon Smyth 53k
2
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1
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312
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Answer: Answer: Post translational modifications and phosphoproteomics in limpa?
12 weeks ago • updated 25 days ago Gordon Smyth 53k
0
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0
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273
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Answer: Answer: How to model DE for RNA-seq in concordant monozygotic twins?
4 months ago Gordon Smyth 53k
1
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0
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517
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Comment: Comment: incomplete imputation of missing values with LEA impute() function
4 months ago Gordon Smyth 53k
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1
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489
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Answer: Answer: Help with defining groups
4 months ago • updated 25 days ago Gordon Smyth 53k
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0
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1.6k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
4 months ago Gordon Smyth 53k
0
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1
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1.6k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
4 months ago Gordon Smyth 53k
2
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0
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384
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Answer: Answer: replace cat with message in glmTreat when lfc = 0
4 months ago Gordon Smyth 53k
0
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1
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1.6k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
4 months ago Gordon Smyth 53k
2
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1
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1.6k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
4 months ago Gordon Smyth 53k
3
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2
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1.6k
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Answer: Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
5 months ago Gordon Smyth 53k
0
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0
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503
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Comment: Comment: voomLmFit fitted log-CPM values
5 months ago Gordon Smyth 53k
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1
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503
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Answer: Answer: voomLmFit fitted log-CPM values
5 months ago Gordon Smyth 53k
0
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0
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428
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Comment: Comment: ROAST compare results with complex design
5 months ago Gordon Smyth 53k
5,338 results • Page 1 of 107
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