Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
2.3k
views
Comment: Comment: How to load scRNA-seq data from GEO
2 days ago Gordon Smyth 52k
1
vote
0
replies
2.3k
views
Comment: Comment: How to load scRNA-seq data from GEO
2 days ago Gordon Smyth 52k
0
votes
1
reply
2.3k
views
Comment: Comment: limma correction for tumor purity
3 days ago Gordon Smyth 52k
1
vote
1
reply
836
views
Comment: Comment: Dealing with heteroscedascity in limma
4 days ago Gordon Smyth 52k
0
votes
1
reply
2.3k
views
Comment: Comment: How to load scRNA-seq data from GEO
4 days ago Gordon Smyth 52k
1
vote
3
replies
2.3k
views
Answer: Answer: limma correction for tumor purity
5 days ago • updated 3 days ago Gordon Smyth 52k
1
vote
1
reply
836
views
Answer: Answer: Dealing with heteroscedascity in limma
5 days ago Gordon Smyth 52k
0
votes
0
replies
506
views
Comment: Comment: Check removeBatchEffect effectiveness
5 days ago Gordon Smyth 52k
0
votes
1
reply
2.3k
views
Answer: Answer: How to load scRNA-seq data from GEO
6 days ago Gordon Smyth 52k
0
votes
0
replies
819
views
Comment: Comment: parameters of filterByExpr
6 days ago Gordon Smyth 52k
0
votes
1
reply
819
views
Comment: Comment: parameters of filterByExpr
7 days ago Gordon Smyth 52k
1
vote
1
reply
819
views
Answer: Answer: parameters of filterByExpr
8 days ago Gordon Smyth 52k
0
votes
1
reply
506
views
Answer: Answer: Check removeBatchEffect effectiveness
14 days ago • updated 13 days ago Gordon Smyth 52k
2
votes
0
replies
438
views
Answer: Answer: ROAST for small sets
19 days ago Gordon Smyth 52k
1
vote
0
replies
1.8k
views
Comment: Comment: edgeR::cpm() results in negative values from raw counts of 0
20 days ago Gordon Smyth 52k
2
votes
2
replies
1.8k
views
Answer: Answer: edgeR::cpm() results in negative values from raw counts of 0
20 days ago • updated 18 days ago Gordon Smyth 52k
2
votes
1
reply
1.8k
views
Comment: Comment: edgeR::cpm() results in negative values from raw counts of 0
20 days ago Gordon Smyth 52k
2
votes
0
replies
1.6k
views
Answer: Answer: how to use `arrayWeightsQuick()`?
4 weeks ago Gordon Smyth 52k
0
votes
1
reply
1.6k
views
Comment: Comment: how to use `arrayWeightsQuick()`?
4 weeks ago Gordon Smyth 52k
0
votes
1
reply
673
views
Answer: Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR
4 weeks ago • updated 29 days ago Gordon Smyth 52k
2
votes
0
replies
1.2k
views
Answer: Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
6 weeks ago Gordon Smyth 52k
1
vote
0
replies
868
views
Comment: Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
7 weeks ago Gordon Smyth 52k
3
votes
1
reply
868
views
Answer: Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
7 weeks ago Gordon Smyth 52k
0
votes
0
replies
284
views
Answer: Answer: Is it possible to model DNA methylation as a dose response in edgeR?
9 weeks ago Gordon Smyth 52k
1
vote
1
reply
1.0k
views
Comment: Comment: Use of limma R package with targeted proteomics for DE analysis
10 weeks ago Gordon Smyth 52k
0
votes
0
replies
469
views
Answer: Answer: cameraPR() non directional test
11 weeks ago Gordon Smyth 52k
1
vote
1
reply
1.0k
views
Answer: Answer: Use of limma R package with targeted proteomics for DE analysis
11 weeks ago Gordon Smyth 52k
0
votes
0
replies
645
views
Answer: Answer: To count or not to count multi-overlapping reads?
12 weeks ago Gordon Smyth 52k
1
vote
1
reply
672
views
Answer: Answer: EdgeR Biological CVs
3 months ago Gordon Smyth 52k
1
vote
0
replies
541
views
Answer: Answer: Differential variability modelling with vst() expression
4 months ago Gordon Smyth 52k
0
votes
1
reply
1.2k
views
Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
4 months ago Gordon Smyth 52k
0
votes
1
reply
421
views
Answer: Answer: Mean variance curve troubleshoot filtering
4 months ago Gordon Smyth 52k
1
vote
1
reply
783
views
Comment: Comment: How do I fix an odd voom plot in a combined dataset?
4 months ago Gordon Smyth 52k
0
votes
1
reply
1.2k
views
Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
4 months ago Gordon Smyth 52k
0
votes
1
reply
1.2k
views
Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
4 months ago Gordon Smyth 52k
2
votes
1
reply
783
views
Answer: Answer: How do I fix an odd voom plot in a combined dataset?
4 months ago Gordon Smyth 52k
1
vote
1
reply
1.2k
views
Answer: Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
4 months ago Gordon Smyth 52k
0
votes
0
replies
3.5k
views
Comment: Comment: edgeR + tximport: calcNormFactors and the usage of offsets
4 months ago Gordon Smyth 52k
0
votes
1
reply
586
views
Answer: Answer: Cross-validation with multiple control subgroups in limma
4 months ago Gordon Smyth 52k
0
votes
0
replies
1.1k
views
Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
4 months ago Gordon Smyth 52k
0
votes
1
reply
1.1k
views
Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
4 months ago Gordon Smyth 52k
1
vote
1
reply
1.1k
views
Answer: Answer: Normalizing batch effects using technical replicates for DGE analysis between tw
4 months ago Gordon Smyth 52k
0
votes
0
replies
1.5k
views
Answer: Answer: Limma - using both array and spot weights in lmFit
4 months ago Gordon Smyth 52k
1
vote
0
replies
2.1k
views
Comment: Comment: Feature Counts - potential bug with outfile.jcounts
5 months ago Gordon Smyth 52k
1
vote
2
replies
2.1k
views
Answer: Answer: Feature Counts - potential bug with outfile.jcounts
5 months ago Gordon Smyth 52k
0
votes
0
replies
659
views
Answer: Answer: Feature Counts -R XS Read Assignment Tag
5 months ago Gordon Smyth 52k
0
votes
1
reply
452
views
Answer: Answer: Advice needed: Using limma for differential pathway analysis with continuous dis
5 months ago Gordon Smyth 52k
3
votes
1
reply
1.1k
views
Answer: Answer: RSubread output significantly different from bash Subread output
5 months ago Gordon Smyth 52k
0
votes
1
reply
641
views
Answer: Answer: sva: get a sv for RIN scores
5 months ago Gordon Smyth 52k
0
votes
1
reply
1.3k
views
Comment: Comment: Differential Expression Genes as Independent Variables
5 months ago Gordon Smyth 52k
5,241 results • Page 1 of 105
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6