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99
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Answer: Answer: PTM analysis in LIMPA
3 days ago Gordon Smyth 53k
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0
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1.2k
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Answer: Answer: two questions about limma
8 days ago Gordon Smyth 53k
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0
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288
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Comment: Comment: Large logFC but somewhat high FDR
13 days ago Gordon Smyth 53k
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0
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1.1k
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Answer: Answer: p.adjust BH Question
13 days ago Gordon Smyth 53k
1
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1
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288
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Answer: Answer: Large logFC but somewhat high FDR
13 days ago Gordon Smyth 53k
0
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1
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130
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Answer: Answer: limpa - drivers for unusually high standard error?
14 days ago Gordon Smyth 53k
2
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1
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251
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Answer: Answer: Identifying differentially expressed genes in individual samples from a large co
19 days ago Gordon Smyth 53k
2
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1
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181
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Answer: Answer: Post translational modifications and phosphoproteomics in limpa?
24 days ago Gordon Smyth 53k
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0
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210
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Answer: Answer: How to model DE for RNA-seq in concordant monozygotic twins?
9 weeks ago • updated 8 weeks ago Gordon Smyth 53k
1
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376
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Comment: Comment: incomplete imputation of missing values with LEA impute() function
9 weeks ago Gordon Smyth 53k
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1
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413
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Answer: Answer: Help with defining groups
10 weeks ago Gordon Smyth 53k
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0
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1.3k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
10 weeks ago Gordon Smyth 53k
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1
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1.3k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
11 weeks ago Gordon Smyth 53k
2
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0
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290
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Answer: Answer: replace cat with message in glmTreat when lfc = 0
11 weeks ago Gordon Smyth 53k
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1
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1.3k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
11 weeks ago Gordon Smyth 53k
2
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1
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1.3k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
11 weeks ago Gordon Smyth 53k
3
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2
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1.3k
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Answer: Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
12 weeks ago Gordon Smyth 53k
0
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0
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424
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Comment: Comment: voomLmFit fitted log-CPM values
3 months ago Gordon Smyth 53k
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1
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424
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Answer: Answer: voomLmFit fitted log-CPM values
3 months ago Gordon Smyth 53k
0
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0
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364
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Comment: Comment: ROAST compare results with complex design
3 months ago Gordon Smyth 53k
0
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0
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730
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Comment: Comment: Are voomByGroup and voomLmFit compatible?
3 months ago Gordon Smyth 53k
1
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0
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730
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Comment: Comment: Are voomByGroup and voomLmFit compatible?
3 months ago Gordon Smyth 53k
1
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1
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516
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Comment: Comment: p-adjusted values in multiple comparisons
3 months ago Gordon Smyth 53k
0
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1
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730
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Comment: Comment: Are voomByGroup and voomLmFit compatible?
3 months ago Gordon Smyth 53k
2
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1
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516
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Answer: Answer: p-adjusted values in multiple comparisons
3 months ago Gordon Smyth 53k
1
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2
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730
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Answer: Answer: Are voomByGroup and voomLmFit compatible?
3 months ago Gordon Smyth 53k
1
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0
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340
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Answer: Answer: Can limma be used with module eigengenes instead of genes?
3 months ago Gordon Smyth 53k
1
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0
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966
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Comment: Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long
3 months ago Gordon Smyth 53k
0
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1
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966
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Comment: Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long
3 months ago Gordon Smyth 53k
1
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0
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354
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Answer: Answer: Testing KO vs WT at day4/day14 with interactions in edgeR
3 months ago Gordon Smyth 53k
1
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1
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966
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Answer: Answer: Transcript expression analysis in edgeR from gtf file obtained from merging long
3 months ago Gordon Smyth 53k
0
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1
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966
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Comment: Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long
3 months ago Gordon Smyth 53k
0
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1
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966
views
Comment: Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long
3 months ago Gordon Smyth 53k
1
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1
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373
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Answer: Answer: Difference between logFC in limma-voom and weighted limma-voom
4 months ago Gordon Smyth 53k
3
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0
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369
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Answer: Answer: Limpa Pipeline Order
4 months ago Gordon Smyth 53k
3
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1
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448
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Answer: Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
4 months ago Gordon Smyth 53k
2
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1
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418
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Answer: Answer: Limma : paired samples leading to unexpected estimates
4 months ago Gordon Smyth 53k
2
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1
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515
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Answer: Answer: (Why) do limma's confidence intervals depend on topTable's p.value argument?
4 months ago Gordon Smyth 53k
0
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0
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1.9k
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Comment: Comment: weird model design for DE analysis
4 months ago Gordon Smyth 53k
2
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1
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897
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Answer: Answer: Transcript expression analysis using EdgeR
4 months ago Gordon Smyth 53k
0
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0
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937
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Answer: Answer: Using offset in edgeR
4 months ago Gordon Smyth 53k
1
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1
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2.5k
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Answer: Answer: Non-monotonic voomByGroup plot in Xenium data
4 months ago Gordon Smyth 53k
1
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1
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1.9k
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Answer: Answer: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
4 months ago Gordon Smyth 53k
2
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0
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5.6k
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Comment: Comment: competitive enrichment test yields too few significant results, self-contained t
4 months ago Gordon Smyth 53k
1
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1
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5.6k
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Comment: Comment: competitive enrichment test yields too few significant results, self-contained t
4 months ago Gordon Smyth 53k
2
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1
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5.6k
views
Answer: Answer: competitive enrichment test yields too few significant results, self-contained t
4 months ago Gordon Smyth 53k
0
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0
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1.4k
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Answer: Answer: How to avoid losing a sample as reference running an individual differential exp
5 months ago Gordon Smyth 53k
0
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0
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2.3k
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Comment: Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-
5 months ago Gordon Smyth 53k
0
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1
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3.3k
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Comment: Comment: I would like to perform differential expression analysis of lncRNAs using DESeq2
5 months ago Gordon Smyth 53k
0
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1
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2.3k
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Answer: Answer: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-
5 months ago Gordon Smyth 53k
5,308 results • Page 1 of 107
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