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Comment: Comment: Method to find pathways different between 2 groups
16 hours ago Gordon Smyth 50k
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204
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Answer: Answer: Method to find pathways different between 2 groups
2 days ago Gordon Smyth 50k
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174
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Comment: Comment: package goseq seems to be not available on the latest version of R
2 days ago Gordon Smyth 50k
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0
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342
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Answer: Answer: limma Intercept vs No-intercept models completely changing DMR results?
4 days ago Gordon Smyth 50k
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1
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174
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Answer: Answer: package goseq seems to be not available on the latest version of R
4 days ago • updated 3 days ago Gordon Smyth 50k
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130
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Answer: Answer: NEED FOR NESSASORY HELP
5 days ago Gordon Smyth 50k
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110
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Answer: Answer: Gene-by-sample covariates in limma
5 days ago Gordon Smyth 50k
3
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2
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548
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Answer: Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
5 days ago Gordon Smyth 50k
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1
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1.2k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
8 days ago Gordon Smyth 50k
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1
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193
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Answer: Answer: Improving the design matrices vignette in RNAseq123
12 days ago Gordon Smyth 50k
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0
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181
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Answer: Answer: Citation for edgeR user guide
14 days ago Gordon Smyth 50k
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1
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172
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Answer: Answer: limma-voom: Calculate the log-fold change in gene expression within a sample
15 days ago Gordon Smyth 50k
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1
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440
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Comment: Comment: FilterByExpr low counts with small sample size
17 days ago Gordon Smyth 50k
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1
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1.2k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
17 days ago Gordon Smyth 50k
2
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1
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1.2k
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
17 days ago Gordon Smyth 50k
1
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0
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1.2k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
17 days ago Gordon Smyth 50k
0
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1
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215
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Answer: Answer: RNAseq:Technical replicates from different batches
18 days ago Gordon Smyth 50k
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0
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193
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Comment: Comment: Finding DEGs by using edgeR
19 days ago Gordon Smyth 50k
3
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1
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440
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Answer: Answer: FilterByExpr low counts with small sample size
19 days ago Gordon Smyth 50k
0
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1
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138
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Answer: Answer: How to make DGEList and design matrix by edgeR package
19 days ago Gordon Smyth 50k
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1
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193
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Answer: Answer: Finding DEGs by using edgeR
19 days ago Gordon Smyth 50k
3
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0
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180
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Answer: Answer: Log-cpm values from limma
19 days ago Gordon Smyth 50k
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1
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440
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Comment: Comment: FilterByExpr low counts with small sample size
20 days ago Gordon Smyth 50k
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0
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1.3k
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Comment: Comment: Batch correction and repeated measures
20 days ago Gordon Smyth 50k
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1
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325
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Comment: Comment: Methylation Analysis experiment design using Limma
20 days ago Gordon Smyth 50k
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1
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325
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Answer: Answer: Methylation Analysis experiment design using Limma
21 days ago Gordon Smyth 50k
1
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1
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934
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
21 days ago Gordon Smyth 50k
1
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1
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934
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
21 days ago Gordon Smyth 50k
1
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0
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188
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Answer: Answer: Differentially expressed genes in monocle pseudotime
22 days ago Gordon Smyth 50k
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0
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342
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Answer: Answer: permutation test in edgeR
23 days ago • updated 17 days ago Gordon Smyth 50k
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0
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352
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Answer: Answer: Why is my gene not significantly differentially expressed?
23 days ago Gordon Smyth 50k
1
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2
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934
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
24 days ago • updated 23 days ago Gordon Smyth 50k
2
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1
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934
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Answer: Answer: Light difference when using coef vs omit a group when compare 3 groups.
26 days ago Gordon Smyth 50k
0
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0
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171
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Answer: Answer: Limma design matrix only showing 3/4 treatments?
4 weeks ago Gordon Smyth 50k
1
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1
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
4 weeks ago Gordon Smyth 50k
1
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0
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
4 weeks ago Gordon Smyth 50k
0
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0
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249
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Comment: Comment: Regressing out batch effects
4 weeks ago Gordon Smyth 50k
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1
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
4 weeks ago Gordon Smyth 50k
0
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0
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941
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Comment: Comment: limma models out of memory issue on Slurm HPC
4 weeks ago Gordon Smyth 50k
0
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1
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445
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Comment: Comment: Using a change in a continuous explanatory variable to test changes in gene expr
4 weeks ago Gordon Smyth 50k
0
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1
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941
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Comment: Comment: limma models out of memory issue on Slurm HPC
4 weeks ago Gordon Smyth 50k
1
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1
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445
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Answer: Answer: Using a change in a continuous explanatory variable to test changes in gene expr
4 weeks ago Gordon Smyth 50k
0
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1
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176
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Answer: Answer: edgeR analysis: glm functions and offset matrix
5 weeks ago Gordon Smyth 50k
1
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0
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941
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Comment: Comment: limma models out of memory issue on Slurm HPC
5 weeks ago Gordon Smyth 50k
2
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1
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941
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Comment: Comment: limma models out of memory issue on Slurm HPC
5 weeks ago • updated 4 weeks ago Gordon Smyth 50k
0
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1
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941
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Comment: Comment: limma models out of memory issue on Slurm HPC
5 weeks ago Gordon Smyth 50k
0
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1
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941
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Comment: Comment: limma models out of memory issue on Slurm HPC
5 weeks ago Gordon Smyth 50k
0
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1
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941
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Comment: Comment: limma models out of memory issue on Slurm HPC
5 weeks ago Gordon Smyth 50k
0
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1
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941
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Comment: Comment: limma models out of memory issue on Slurm HPC
5 weeks ago Gordon Smyth 50k
0
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1
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941
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Comment: Comment: limma models out of memory issue on Slurm HPC
5 weeks ago Gordon Smyth 50k
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