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115
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Answer:
Answer: How to model DE for RNA-seq in concordant monozygotic twins?
18 days ago • updated 14 days ago
Gordon Smyth
53k
1
vote
0
replies
149
views
Comment:
Comment: incomplete imputation of missing values with LEA impute() function
19 days ago
Gordon Smyth
53k
0
votes
1
reply
301
views
Answer:
Answer: Help with defining groups
24 days ago
Gordon Smyth
53k
0
votes
0
replies
1.1k
views
Comment:
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
27 days ago
Gordon Smyth
53k
0
votes
1
reply
1.1k
views
Comment:
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
4 weeks ago
Gordon Smyth
53k
0
votes
0
replies
167
views
Answer:
Answer: replace cat with message in glmTreat when lfc = 0
4 weeks ago
Gordon Smyth
53k
0
votes
1
reply
1.1k
views
Comment:
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
4 weeks ago
Gordon Smyth
53k
2
votes
1
reply
1.1k
views
Comment:
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
5 weeks ago
Gordon Smyth
53k
3
votes
2
replies
1.1k
views
Answer:
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
5 weeks ago
Gordon Smyth
53k
0
votes
0
replies
319
views
Comment:
Comment: voomLmFit fitted log-CPM values
6 weeks ago
Gordon Smyth
53k
0
votes
1
reply
319
views
Answer:
Answer: voomLmFit fitted log-CPM values
6 weeks ago
Gordon Smyth
53k
0
votes
0
replies
292
views
Comment:
Comment: ROAST compare results with complex design
6 weeks ago
Gordon Smyth
53k
0
votes
0
replies
578
views
Comment:
Comment: Are voomByGroup and voomLmFit compatible?
8 weeks ago • updated 6 weeks ago
Gordon Smyth
53k
1
vote
0
replies
578
views
Comment:
Comment: Are voomByGroup and voomLmFit compatible?
8 weeks ago
Gordon Smyth
53k
1
vote
1
reply
383
views
Comment:
Comment: p-adjusted values in multiple comparisons
9 weeks ago
Gordon Smyth
53k
0
votes
1
reply
578
views
Comment:
Comment: Are voomByGroup and voomLmFit compatible?
9 weeks ago
Gordon Smyth
53k
2
votes
1
reply
383
views
Answer:
Answer: p-adjusted values in multiple comparisons
9 weeks ago
Gordon Smyth
53k
1
vote
2
replies
578
views
Answer:
Answer: Are voomByGroup and voomLmFit compatible?
9 weeks ago • updated 8 weeks ago
Gordon Smyth
53k
1
vote
0
replies
180
views
Answer:
Answer: Can limma be used with module eigengenes instead of genes?
9 weeks ago
Gordon Smyth
53k
1
vote
0
replies
797
views
Comment:
Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long
10 weeks ago
Gordon Smyth
53k
0
votes
1
reply
797
views
Comment:
Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long
10 weeks ago
Gordon Smyth
53k
1
vote
0
replies
272
views
Answer:
Answer: Testing KO vs WT at day4/day14 with interactions in edgeR
10 weeks ago
Gordon Smyth
53k
1
vote
1
reply
797
views
Answer:
Answer: Transcript expression analysis in edgeR from gtf file obtained from merging long
10 weeks ago
Gordon Smyth
53k
0
votes
1
reply
797
views
Comment:
Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long
10 weeks ago
Gordon Smyth
53k
0
votes
1
reply
797
views
Comment:
Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long
10 weeks ago
Gordon Smyth
53k
1
vote
1
reply
269
views
Answer:
Answer: Difference between logFC in limma-voom and weighted limma-voom
10 weeks ago
Gordon Smyth
53k
3
votes
0
replies
294
views
Answer:
Answer: Limpa Pipeline Order
10 weeks ago
Gordon Smyth
53k
2
votes
1
reply
348
views
Answer:
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
11 weeks ago • updated 10 weeks ago
Gordon Smyth
53k
2
votes
1
reply
338
views
Answer:
Answer: Limma : paired samples leading to unexpected estimates
11 weeks ago
Gordon Smyth
53k
2
votes
1
reply
332
views
Answer:
Answer: (Why) do limma's confidence intervals depend on topTable's p.value argument?
11 weeks ago
Gordon Smyth
53k
0
votes
0
replies
1.8k
views
Comment:
Comment: weird model design for DE analysis
12 weeks ago
Gordon Smyth
53k
2
votes
1
reply
819
views
Answer:
Answer: Transcript expression analysis using EdgeR
12 weeks ago
Gordon Smyth
53k
0
votes
0
replies
891
views
Answer:
Answer: Using offset in edgeR
3 months ago
Gordon Smyth
53k
1
vote
1
reply
2.4k
views
Answer:
Answer: Non-monotonic voomByGroup plot in Xenium data
3 months ago
Gordon Smyth
53k
1
vote
1
reply
1.8k
views
Answer:
Answer: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
3 months ago
Gordon Smyth
53k
2
votes
0
replies
5.5k
views
Comment:
Comment: competitive enrichment test yields too few significant results, self-contained t
3 months ago
Gordon Smyth
53k
1
vote
1
reply
5.5k
views
Comment:
Comment: competitive enrichment test yields too few significant results, self-contained t
3 months ago
Gordon Smyth
53k
2
votes
1
reply
5.5k
views
Answer:
Answer: competitive enrichment test yields too few significant results, self-contained t
3 months ago
Gordon Smyth
53k
0
votes
0
replies
1.3k
views
Answer:
Answer: How to avoid losing a sample as reference running an individual differential exp
3 months ago
Gordon Smyth
53k
0
votes
0
replies
2.2k
views
Comment:
Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-
3 months ago
Gordon Smyth
53k
0
votes
1
reply
3.2k
views
Comment:
Comment: I would like to perform differential expression analysis of lncRNAs using DESeq2
3 months ago
Gordon Smyth
53k
0
votes
1
reply
2.2k
views
Answer:
Answer: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-
3 months ago
Gordon Smyth
53k
1
vote
1
reply
3.2k
views
Answer:
Answer: I would like to perform differential expression analysis of lncRNAs using DESeq2
3 months ago
Gordon Smyth
53k
1
vote
1
reply
3.7k
views
Answer:
Answer: Is voomByGroup available in limma?
4 months ago
Gordon Smyth
53k
0
votes
1
reply
1.7k
views
Answer:
Answer: How to use goana function with zebrafish genome from org.Dr.eg.db
4 months ago
Gordon Smyth
53k
0
votes
1
reply
1.7k
views
Comment:
Comment: How to use goana function with zebrafish genome from org.Dr.eg.db
4 months ago
Gordon Smyth
53k
0
votes
0
replies
288
views
Job:
Lab Head positions at the WEHI, Melbourne, Australia
JobPosting
Bioconductor
4 months ago
Gordon Smyth
53k
3
votes
1
reply
6.3k
views
Answer:
Answer: limma duplicateCorrelation appropriate where some blocks cross condition and som
4 months ago
Gordon Smyth
53k
1
vote
1
reply
2.6k
views
Comment:
Comment: Altered (negative or positive) logFC values for same gene from two intitial coun
4 months ago
Gordon Smyth
53k
1
vote
1
reply
2.6k
views
Answer:
Answer: Altered (negative or positive) logFC values for same gene from two intitial coun
4 months ago
Gordon Smyth
53k
5,300 results • Page
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