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Answer: Answer: How to model DE for RNA-seq in concordant monozygotic twins?
18 days ago • updated 14 days ago Gordon Smyth 53k
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Comment: Comment: incomplete imputation of missing values with LEA impute() function
19 days ago Gordon Smyth 53k
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301
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Answer: Answer: Help with defining groups
24 days ago Gordon Smyth 53k
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1.1k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
27 days ago Gordon Smyth 53k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
4 weeks ago Gordon Smyth 53k
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167
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Answer: Answer: replace cat with message in glmTreat when lfc = 0
4 weeks ago Gordon Smyth 53k
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1.1k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
4 weeks ago Gordon Smyth 53k
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1.1k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
5 weeks ago Gordon Smyth 53k
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1.1k
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Answer: Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
5 weeks ago Gordon Smyth 53k
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319
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Comment: Comment: voomLmFit fitted log-CPM values
6 weeks ago Gordon Smyth 53k
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319
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Answer: Answer: voomLmFit fitted log-CPM values
6 weeks ago Gordon Smyth 53k
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292
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Comment: Comment: ROAST compare results with complex design
6 weeks ago Gordon Smyth 53k
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578
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Comment: Comment: Are voomByGroup and voomLmFit compatible?
8 weeks ago • updated 6 weeks ago Gordon Smyth 53k
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578
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Comment: Comment: Are voomByGroup and voomLmFit compatible?
8 weeks ago Gordon Smyth 53k
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383
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Comment: Comment: p-adjusted values in multiple comparisons
9 weeks ago Gordon Smyth 53k
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578
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Comment: Comment: Are voomByGroup and voomLmFit compatible?
9 weeks ago Gordon Smyth 53k
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383
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Answer: Answer: p-adjusted values in multiple comparisons
9 weeks ago Gordon Smyth 53k
1
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2
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578
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Answer: Answer: Are voomByGroup and voomLmFit compatible?
9 weeks ago • updated 8 weeks ago Gordon Smyth 53k
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180
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Answer: Answer: Can limma be used with module eigengenes instead of genes?
9 weeks ago Gordon Smyth 53k
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797
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Comment: Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long
10 weeks ago Gordon Smyth 53k
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797
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Comment: Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long
10 weeks ago Gordon Smyth 53k
1
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272
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Answer: Answer: Testing KO vs WT at day4/day14 with interactions in edgeR
10 weeks ago Gordon Smyth 53k
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797
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Answer: Answer: Transcript expression analysis in edgeR from gtf file obtained from merging long
10 weeks ago Gordon Smyth 53k
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1
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797
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Comment: Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long
10 weeks ago Gordon Smyth 53k
0
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1
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797
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Comment: Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long
10 weeks ago Gordon Smyth 53k
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269
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Answer: Answer: Difference between logFC in limma-voom and weighted limma-voom
10 weeks ago Gordon Smyth 53k
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294
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Answer: Answer: Limpa Pipeline Order
10 weeks ago Gordon Smyth 53k
2
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348
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Answer: Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
11 weeks ago • updated 10 weeks ago Gordon Smyth 53k
2
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1
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338
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Answer: Answer: Limma : paired samples leading to unexpected estimates
11 weeks ago Gordon Smyth 53k
2
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332
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Answer: Answer: (Why) do limma's confidence intervals depend on topTable's p.value argument?
11 weeks ago Gordon Smyth 53k
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1.8k
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Comment: Comment: weird model design for DE analysis
12 weeks ago Gordon Smyth 53k
2
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1
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819
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Answer: Answer: Transcript expression analysis using EdgeR
12 weeks ago Gordon Smyth 53k
0
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0
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891
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Answer: Answer: Using offset in edgeR
3 months ago Gordon Smyth 53k
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1
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2.4k
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Answer: Answer: Non-monotonic voomByGroup plot in Xenium data
3 months ago Gordon Smyth 53k
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1
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1.8k
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Answer: Answer: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
3 months ago Gordon Smyth 53k
2
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0
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5.5k
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Comment: Comment: competitive enrichment test yields too few significant results, self-contained t
3 months ago Gordon Smyth 53k
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1
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5.5k
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Comment: Comment: competitive enrichment test yields too few significant results, self-contained t
3 months ago Gordon Smyth 53k
2
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1
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5.5k
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Answer: Answer: competitive enrichment test yields too few significant results, self-contained t
3 months ago Gordon Smyth 53k
0
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0
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1.3k
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Answer: Answer: How to avoid losing a sample as reference running an individual differential exp
3 months ago Gordon Smyth 53k
0
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0
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2.2k
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Comment: Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-
3 months ago Gordon Smyth 53k
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1
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3.2k
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Comment: Comment: I would like to perform differential expression analysis of lncRNAs using DESeq2
3 months ago Gordon Smyth 53k
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1
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2.2k
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Answer: Answer: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-
3 months ago Gordon Smyth 53k
1
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1
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3.2k
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Answer: Answer: I would like to perform differential expression analysis of lncRNAs using DESeq2
3 months ago Gordon Smyth 53k
1
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1
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3.7k
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Answer: Answer: Is voomByGroup available in limma?
4 months ago Gordon Smyth 53k
0
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1
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1.7k
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Answer: Answer: How to use goana function with zebrafish genome from org.Dr.eg.db
4 months ago Gordon Smyth 53k
0
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1
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1.7k
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Comment: Comment: How to use goana function with zebrafish genome from org.Dr.eg.db
4 months ago Gordon Smyth 53k
0
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0
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288
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Job: Lab Head positions at the WEHI, Melbourne, Australia
JobPosting Bioconductor
4 months ago Gordon Smyth 53k
3
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1
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6.3k
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Answer: Answer: limma duplicateCorrelation appropriate where some blocks cross condition and som
4 months ago Gordon Smyth 53k
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1
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2.6k
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Comment: Comment: Altered (negative or positive) logFC values for same gene from two intitial coun
4 months ago Gordon Smyth 53k
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1
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2.6k
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Answer: Answer: Altered (negative or positive) logFC values for same gene from two intitial coun
4 months ago Gordon Smyth 53k
5,300 results • Page 1 of 106
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