Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.1k
views
Answer: Answer: Feature Counts -R XS Read Assignment Tag
14 months ago Gordon Smyth 53k
0
votes
1
reply
850
views
Answer: Answer: Advice needed: Using limma for differential pathway analysis with continuous dis
14 months ago Gordon Smyth 53k
3
votes
1
reply
1.6k
views
Answer: Answer: RSubread output significantly different from bash Subread output
14 months ago Gordon Smyth 53k
0
votes
1
reply
1.1k
views
Answer: Answer: sva: get a sv for RIN scores
15 months ago • updated 14 months ago Gordon Smyth 53k
0
votes
1
reply
2.0k
views
Comment: Comment: Differential Expression Genes as Independent Variables
15 months ago Gordon Smyth 53k
1
vote
2
replies
781
views
Answer: Answer: contrast matrix design for a continuous variable
15 months ago Gordon Smyth 53k
0
votes
1
reply
2.0k
views
Comment: Comment: Differential Expression Genes as Independent Variables
15 months ago Gordon Smyth 53k
2
votes
3
replies
1.1k
views
Answer: Answer: Crossover design with limma
15 months ago • updated 14 months ago Gordon Smyth 53k
0
votes
1
reply
2.0k
views
Answer: Answer: Differential Expression Genes as Independent Variables
15 months ago Gordon Smyth 53k
1
vote
1
reply
3.9k
views
Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
15 months ago Gordon Smyth 53k
1
vote
1
reply
3.9k
views
Answer: Answer: What type of counts data to import for performing Isoform analysis in edgeR
15 months ago Gordon Smyth 53k
0
votes
1
reply
3.9k
views
Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
15 months ago Gordon Smyth 53k
1
vote
0
replies
1.6k
views
Comment: Comment: ANOVA like approach of edgeR
15 months ago Gordon Smyth 53k
3
votes
1
reply
1.6k
views
Answer: Answer: ANOVA like approach of edgeR
15 months ago Gordon Smyth 53k
0
votes
1
reply
777
views
Answer: Answer: Create Illmina bead summary data
15 months ago Gordon Smyth 53k
1
vote
0
replies
1.1k
views
Comment: Comment: Is it recommended to analyze different tissues together when using edgeR
15 months ago Gordon Smyth 53k
2
votes
1
reply
1.1k
views
Answer: Answer: Is it recommended to analyze different tissues together when using edgeR
15 months ago Gordon Smyth 53k
0
votes
0
replies
650
views
Answer: Answer: Are unequal sample sizes in differential gene expression (DGE) analysis a proble
15 months ago Gordon Smyth 53k
0
votes
1
reply
3.0k
views
Comment: Comment: limma technical repeat correction
15 months ago Gordon Smyth 53k
2
votes
0
replies
1.7k
views
Answer: Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
15 months ago Gordon Smyth 53k
0
votes
0
replies
453
views
Answer: Answer: List of DEGs belonging to an Agilent-single color microarray experiment using Li
15 months ago Gordon Smyth 53k
1
vote
1
reply
1.6k
views
Answer: Answer: [How to construct a model.matrix ]
15 months ago Gordon Smyth 53k
1
vote
1
reply
1.3k
views
Comment: Comment: Limma- Print-tip loess normalisation-printer layout information does not match M
15 months ago Gordon Smyth 53k
2
votes
1
reply
1.3k
views
Answer: Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
15 months ago Gordon Smyth 53k
1
vote
1
reply
3.0k
views
Comment: Comment: Differential Expression Analysis with unbalanced batches without replication bet
15 months ago Gordon Smyth 53k
1
vote
1
reply
3.0k
views
Answer: Answer: Differential Expression Analysis with unbalanced batches without replication bet
15 months ago Gordon Smyth 53k
1
vote
1
reply
3.0k
views
Answer: Answer: Combining RNAseq and microarray data using edgeR/limma-voom
16 months ago Gordon Smyth 53k
1
vote
1
reply
1.5k
views
Answer: Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
16 months ago Gordon Smyth 53k
1
vote
1
reply
3.0k
views
Comment: Comment: limma technical repeat correction
16 months ago Gordon Smyth 53k
1
vote
1
reply
3.0k
views
Comment: Comment: limma technical repeat correction
16 months ago Gordon Smyth 53k
0
votes
1
reply
3.0k
views
Comment: Comment: limma technical repeat correction
16 months ago Gordon Smyth 53k
2
votes
0
replies
1.3k
views
Comment: Comment: Analysis of 2*4 factorial design
16 months ago Gordon Smyth 53k
1
vote
0
replies
4.0k
views
Comment: Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
16 months ago Gordon Smyth 53k
0
votes
1
reply
1.3k
views
Comment: Comment: RNA-seq: samples form different experiments, how to do DGEs?
16 months ago Gordon Smyth 53k
1
vote
1
reply
2.0k
views
Comment: Comment: Zero intra-block correlation in RRBS analysis using voomLmFit with block
16 months ago Gordon Smyth 53k
0
votes
1
reply
1.3k
views
Answer: Answer: RNA-seq: samples form different experiments, how to do DGEs?
16 months ago Gordon Smyth 53k
2
votes
1
reply
1.3k
views
Answer: Answer: Analysis of 2*4 factorial design
16 months ago Gordon Smyth 53k
1
vote
1
reply
2.0k
views
Comment: Comment: Zero intra-block correlation in RRBS analysis using voomLmFit with block
16 months ago Gordon Smyth 53k
0
votes
2
replies
3.0k
views
Answer: Answer: limma technical repeat correction
16 months ago Gordon Smyth 53k
1
vote
0
replies
2.0k
views
Comment: Comment: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
16 months ago Gordon Smyth 53k
1
vote
1
reply
2.0k
views
Comment: Comment: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
16 months ago Gordon Smyth 53k
0
votes
0
replies
2.0k
views
Comment: Comment: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
16 months ago Gordon Smyth 53k
2
votes
1
reply
2.0k
views
Answer: Answer: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
16 months ago Gordon Smyth 53k
2
votes
1
reply
2.0k
views
Answer: Answer: Zero intra-block correlation in RRBS analysis using voomLmFit with block
16 months ago Gordon Smyth 53k
0
votes
0
replies
3.5k
views
Comment: Comment: Bioconductor 3.20 Release Schedule
16 months ago Gordon Smyth 53k
0
votes
2
replies
3.5k
views
Answer: Answer: Bioconductor 3.20 Release Schedule
16 months ago Gordon Smyth 53k
1
vote
0
replies
1.3k
views
Answer: Answer: Automatically generate contrasts from a model matrix / formula
16 months ago Gordon Smyth 53k
2
votes
1
reply
877
views
Answer: Answer: How to subset voomLmFit (MArrayLM) object?
16 months ago Gordon Smyth 53k
4
votes
1
reply
793
views
Answer: Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
17 months ago • updated 16 months ago Gordon Smyth 53k
0
votes
1
reply
931
views
Answer: Answer: EdgeR - Apparent Wrong Direction of logFC with Low Count Data
17 months ago Gordon Smyth 53k
5,346 results • Page 4 of 107
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6