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Comment: Comment: Differing results from plotMDS and PCAtools
4 weeks ago Gordon Smyth 50k
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348
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Comment: Comment: Doing comparison of RNA-seq data using EdgeR
4 weeks ago Gordon Smyth 50k
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1.9k
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Answer: Answer: The difference when using Limma compare between 3 conditions vs 2 conditions
4 weeks ago • updated 26 days ago Gordon Smyth 50k
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348
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Answer: Answer: Doing comparison of RNA-seq data using EdgeR
4 weeks ago Gordon Smyth 50k
2
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1
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371
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Answer: Answer: Differing results from plotMDS and PCAtools
4 weeks ago Gordon Smyth 50k
2
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0
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702
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Comment: Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
5 weeks ago Gordon Smyth 50k
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518
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Answer: Answer: Microarray Limma Model fitting and DEG
5 weeks ago Gordon Smyth 50k
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448
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Comment: Comment: DEG Filtering
5 weeks ago Gordon Smyth 50k
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518
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Answer: Answer: Microarray Limma Model fitting and DEG
5 weeks ago Gordon Smyth 50k
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874
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Comment: Comment: limma models out of memory issue on Slurm HPC
5 weeks ago Gordon Smyth 50k
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874
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Answer: Answer: limma models out of memory issue on Slurm HPC
5 weeks ago • updated 29 days ago Gordon Smyth 50k
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447
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Comment: Comment: Batch Effect Correction, Gene Filtering
5 weeks ago Gordon Smyth 50k
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447
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Comment: Comment: Batch Effect Correction, Gene Filtering
5 weeks ago Gordon Smyth 50k
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231
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Answer: Answer: Using splicing junction counts with edgeR/limma-voom
5 weeks ago Gordon Smyth 50k
2
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1
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702
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Answer: Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
6 weeks ago Gordon Smyth 50k
1
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1
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448
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Comment: Comment: DEG Filtering
6 weeks ago • updated 5 weeks ago Gordon Smyth 50k
1
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1
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448
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Comment: Comment: DEG Filtering
6 weeks ago Gordon Smyth 50k
1
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291
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Comment: Comment: edgeR, 3 x 2 design with a batch effect and contrasts
6 weeks ago Gordon Smyth 50k
1
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291
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Answer: Answer: edgeR, 3 x 2 design with a batch effect and contrasts
6 weeks ago Gordon Smyth 50k
1
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479
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Comment: Comment: limma: vooma mean-variance trend and data filtration
6 weeks ago Gordon Smyth 50k
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180
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Comment: Comment: Rsubread: buildindex() should support multiple reference files
6 weeks ago Gordon Smyth 50k
2
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448
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Answer: Answer: DEG Filtering
6 weeks ago Gordon Smyth 50k
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265
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Answer: Answer: RNAseq analysis
6 weeks ago Gordon Smyth 50k
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252
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Answer: Answer: between lane normalization upper quantile
6 weeks ago Gordon Smyth 50k
2
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1
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257
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Answer: Answer: Question about extracting co-efficients for pairwise comparisons in edgeR
7 weeks ago Gordon Smyth 50k
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429
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Answer: Answer: DESeq2 filtering vs edgeR filtering
7 weeks ago Gordon Smyth 50k
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479
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Comment: Comment: limma: vooma mean-variance trend and data filtration
7 weeks ago Gordon Smyth 50k
1
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396
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Answer: Answer: Cross-species analysis - how to compute the mid parent value?
7 weeks ago Gordon Smyth 50k
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479
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Answer: Answer: limma: vooma mean-variance trend and data filtration
8 weeks ago • updated 7 weeks ago Gordon Smyth 50k
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1
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496
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Comment: Comment: Constrast for Time Course Experiments using Limma
8 weeks ago Gordon Smyth 50k
2
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1
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496
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Answer: Answer: Constrast for Time Course Experiments using Limma
8 weeks ago Gordon Smyth 50k
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279
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Comment: Comment: Differential enrichment analysis
8 weeks ago Gordon Smyth 50k
1
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419
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Answer: Answer: Right way to pseudobulk donors across replicates in edgeR
8 weeks ago Gordon Smyth 50k
1
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1
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496
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Comment: Comment: Constrast for Time Course Experiments using Limma
8 weeks ago Gordon Smyth 50k
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0
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722
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Comment: Comment: Strange logFC values in differential methylation site anslysis
8 weeks ago Gordon Smyth 50k
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1
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419
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Comment: Comment: Right way to pseudobulk donors across replicates in edgeR
8 weeks ago Gordon Smyth 50k
0
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1
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722
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Comment: Comment: Strange logFC values in differential methylation site anslysis
8 weeks ago Gordon Smyth 50k
0
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1
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722
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Comment: Comment: Strange logFC values in differential methylation site anslysis
8 weeks ago Gordon Smyth 50k
0
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216
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Answer: Answer: Different results from DGE using different subgroups in model.matrix
8 weeks ago Gordon Smyth 50k
0
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0
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722
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Comment: Comment: Strange logFC values in differential methylation site anslysis
8 weeks ago Gordon Smyth 50k
0
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1
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722
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Answer: Answer: Strange logFC values in differential methylation site anslysis
8 weeks ago Gordon Smyth 50k
2
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0
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448
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Answer: Answer: DGE analysis with LIMMA
8 weeks ago Gordon Smyth 50k
0
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0
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246
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Answer: Answer: ExactTest vs QLFTest
9 weeks ago • updated 8 weeks ago Gordon Smyth 50k
0
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1
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296
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Comment: Comment: Interactions in batches of varying size with different number of replicates usin
9 weeks ago Gordon Smyth 50k
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1
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296
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Comment: Comment: Interactions in batches of varying size with different levels of replicates usin
9 weeks ago Gordon Smyth 50k
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1
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279
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Answer: Answer: Differential enrichment analysis
9 weeks ago Gordon Smyth 50k
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2
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722
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Comment: Comment: Strange logFC values in differential methylation site anslysis
9 weeks ago Gordon Smyth 50k
0
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0
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288
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Answer: Answer: Error in featureCounts matrix
9 weeks ago Gordon Smyth 50k
1
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1
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479
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Comment: Comment: Library size normalization in methylation count analysis
9 weeks ago Gordon Smyth 50k
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1
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479
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Comment: Comment: Library size normalization in methylation count analysis
9 weeks ago Gordon Smyth 50k
5,081 results • Page 2 of 102
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