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Answer: Answer: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
11 weeks ago Gordon Smyth 50k
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343
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Answer: Answer: CAMERA + Gene Ontology Gene Sets
11 weeks ago Gordon Smyth 50k
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416
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Answer: Answer: How does one test for interactions in EdgeR?
11 weeks ago Gordon Smyth 50k
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363
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Answer: Answer: limma with interaction term
11 weeks ago Gordon Smyth 50k
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289
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Answer: Answer: Design matrix after RUVg correction
12 weeks ago Gordon Smyth 50k
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323
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Answer: Answer: Longitudinal analysis in Limma
12 weeks ago Gordon Smyth 50k
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346
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Answer: Answer: Nested paired design
12 weeks ago Gordon Smyth 50k
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322
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Answer: Answer: How to get normalized values for methylation counts in edgeR
12 weeks ago Gordon Smyth 50k
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282
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Answer: Answer: Limma design for 3 replicated time courses comparing treatment vs placebo
12 weeks ago Gordon Smyth 50k
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402
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Answer: Answer: limma design model for categorical variable
12 weeks ago Gordon Smyth 50k
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348
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Answer: Answer: voom with quality weights after RUV correction
12 weeks ago Gordon Smyth 50k
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252
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Answer: Answer: Pairwise analysis of DESeq result and limma result
12 weeks ago Gordon Smyth 50k
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424
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Answer: Answer: goseq, warning and strange plot from nullp
3 months ago Gordon Smyth 50k
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975
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Answer: Answer: Packages don't update, but no error or warning is thrown
3 months ago Gordon Smyth 50k
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336
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Answer: Answer: Longitudinal analysis in Limma
3 months ago Gordon Smyth 50k
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437
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Answer: Answer: Adjusting featureCounts settings in Galaxy for miRNA overlaps
3 months ago Gordon Smyth 50k
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292
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Answer: Answer: Using limma for controlling age variable
3 months ago Gordon Smyth 50k
3
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271
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Answer: Answer: Question about DMRcate
3 months ago Gordon Smyth 50k
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747
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Answer: Answer: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
3 months ago Gordon Smyth 50k
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2
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535
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Answer: Answer: edgeR error "Design matrix not of full rank"
3 months ago Gordon Smyth 50k
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263
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Answer: Answer: Problems with Feature counting
3 months ago Gordon Smyth 50k
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1
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579
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Answer: Answer: Does EdgeR trimmed mean of M values (TMM) account for gene length?
3 months ago Gordon Smyth 50k
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542
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Answer: Answer: Monotonic genes in results of differential gene expression analysis
3 months ago Gordon Smyth 50k
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336
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Answer: Answer: EdgeR for methylation analysis when there is no replicates
3 months ago Gordon Smyth 50k
2
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662
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Answer: Answer: EdgeR: Should I include all samples/conditions in my dispersion estimation while
3 months ago Gordon Smyth 50k
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581
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Answer: Answer: filtering lowly expressed reads
3 months ago Gordon Smyth 50k
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289
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Answer: Answer: Dataset imbalance
3 months ago Gordon Smyth 50k
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1.1k
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Answer: Answer: RNAseq paired-sample differantial expression analysis with many samples
3 months ago Gordon Smyth 50k
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304
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Answer: Answer: download problem
3 months ago Gordon Smyth 50k
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328
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Answer: Answer: Group comparison with one sample
4 months ago Gordon Smyth 50k
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611
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Answer: Answer: Help with model for differential expression analysis
4 months ago Gordon Smyth 50k
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455
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Answer: Answer: How to perform longitudinal analysis using EdgeR
4 months ago Gordon Smyth 50k
2
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300
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Answer: Answer: removeBatchEffect with non-linear model fit
4 months ago Gordon Smyth 50k
2
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626
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Answer: Answer: Correct the batch effect in methylation analysis in R
4 months ago Gordon Smyth 50k
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416
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Answer: Answer: Agilent Microarray Gene Oncology analysis gone wrong
4 months ago Gordon Smyth 50k
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461
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Answer: Answer: Assess fit of variance prior
4 months ago Gordon Smyth 50k
3
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548
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Answer: Answer: Filter genes by expression for voomLmFit
4 months ago Gordon Smyth 50k
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437
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Answer: Answer: RNASeq time course analysis, missing time points for control
5 months ago Gordon Smyth 50k
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408
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Answer: Answer: EdgeR: Exact test and glmQLFTest produce very different results
5 months ago Gordon Smyth 50k
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528
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Answer: Answer: Is it appropriate to apply linear mixed models to Voom transformed data?
5 months ago Gordon Smyth 50k
2
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601
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Answer: Answer: limma + voom combine voomWithQualityWeights and duplicateCorrelation
5 months ago Gordon Smyth 50k
0
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0
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781
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Answer: Answer: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
6 months ago Gordon Smyth 50k
3
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620
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Answer: Answer: DecideTest vs topTAGs in edgeR
6 months ago Gordon Smyth 50k
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806
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Answer: Answer: Limma continuous design (association polygenic risk score with gene expression)
6 months ago Gordon Smyth 50k
3
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1
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942
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Answer: Answer: [Bug] Segfault in edgeR::cpm
6 months ago Gordon Smyth 50k
1
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0
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389
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Answer: Answer: "Details" section for specific software packages
6 months ago Gordon Smyth 50k
0
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0
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827
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Answer: Answer: edgeR heatmap construction and interpretation
6 months ago Gordon Smyth 50k
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0
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912
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Answer: Answer: minfi, limma, adjusting for cell counts - integrating the resoults of estimateC
6 months ago Gordon Smyth 50k
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437
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Answer: Answer: Issue with weights in voomLmFit()
6 months ago Gordon Smyth 50k
2
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847
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Answer: Answer: limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsist
6 months ago Gordon Smyth 50k
2,670 results • Page 2 of 54
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