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Comment: Comment: Correct the batch effect in methylation analysis in R
5 months ago Gordon Smyth 50k
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874
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Comment: Comment: DuplicateCorrelation() block by duplicate sample or by cell line ?
5 months ago Gordon Smyth 50k
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370
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Comment: Comment: NCBI protein conversion to CDNA and NCBI gene (in R)
5 months ago Gordon Smyth 50k
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1.2k
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Comment: Comment: Why is DMRcate not available for Bioconductor version 3.18?
5 months ago Gordon Smyth 50k
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2.1k
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Comment: Comment: Unlog transformed data in DESeq2
5 months ago Gordon Smyth 50k
3
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857
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Comment: Comment: limma::voom vs edgeR::voomLmFit - when to use?
5 months ago Gordon Smyth 50k
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865
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Comment: Comment: Help with model.matrix and creating the right contrast matrix for limma
5 months ago Gordon Smyth 50k
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832
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Comment: Comment: Limma continuous design (association polygenic risk score with gene expression)
5 months ago Gordon Smyth 50k
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1.4k
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Comment: Comment: Timely differentially expressed genes
5 months ago Gordon Smyth 50k
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557
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Comment: Comment: Is it appropriate to apply linear mixed models to Voom transformed data?
5 months ago Gordon Smyth 50k
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344
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Comment: Comment: Strange behaviour in Rsubread when trimming sequences leading to a change inthe
6 months ago Gordon Smyth 50k
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641
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Comment: Comment: limma + voom combine voomWithQualityWeights and duplicateCorrelation
6 months ago Gordon Smyth 50k
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492
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Comment: Comment: determine if R package or it's dependencies functionality require internet acces
6 months ago Gordon Smyth 50k
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1
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492
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Comment: Comment: determine if R package or it's dependencies functionality require internet acces
6 months ago Gordon Smyth 50k
0
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1
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832
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Comment: Comment: Limma continuous design (association polygenic risk score with gene expression)
6 months ago Gordon Smyth 50k
0
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0
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968
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Comment: Comment: [Bug] Segfault in edgeR::cpm
6 months ago Gordon Smyth 50k
0
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1
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874
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Comment: Comment: DuplicateCorrelation() block by duplicate sample or by cell line ?
7 months ago • updated 5 months ago Gordon Smyth 50k
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1
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1.3k
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Comment: Comment: using featureCounts (Subread) to count only spliced reads per gene - behavior of
7 months ago Gordon Smyth 50k
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1.3k
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Comment: Comment: Batch correction and repeated measures
7 months ago Gordon Smyth 50k
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1
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1.3k
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Comment: Comment: Batch correction and repeated measures
7 months ago Gordon Smyth 50k
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1
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1.3k
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Comment: Comment: Batch correction and repeated measures
7 months ago Gordon Smyth 50k
1
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890
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Comment: Comment: Phenotype effect - building a contrast matrix - grouping vs interaction
7 months ago Gordon Smyth 50k
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1.9k
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Comment: Comment: LIMMA dupcor() function time issue.
7 months ago Gordon Smyth 50k
1
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1
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1.4k
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Comment: Comment: Timely differentially expressed genes
7 months ago Gordon Smyth 50k
1
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1
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589
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Comment: Comment: comparing contrasts in edger/lima using makeContrasts function
8 months ago Gordon Smyth 50k
0
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1
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865
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Comment: Comment: Help with model.matrix and creating the right contrast matrix for limma
8 months ago Gordon Smyth 50k
0
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0
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755
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Comment: Comment: Why do I obtain Identical Adj.P value when running edgeR ?
8 months ago Gordon Smyth 50k
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14k
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Comment: Comment: Confused about the CPM and TMM normalization in edgeR
8 months ago Gordon Smyth 50k
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0
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6.3k
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Comment: Comment: Using Limma R package For Proteomics differential expression
8 months ago Gordon Smyth 50k
0
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1
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890
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Comment: Comment: Phenotype effect - building a contrast matrix - grouping vs interaction
8 months ago Gordon Smyth 50k
0
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1
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1.4k
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Comment: Comment: Timely differentially expressed genes
8 months ago Gordon Smyth 50k
0
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1
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1.4k
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Comment: Comment: Timely differentially expressed genes
8 months ago Gordon Smyth 50k
0
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1
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953
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Comment: Comment: Limma dispersed distribution of log fold change
8 months ago Gordon Smyth 50k
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1
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3.0k
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Comment: Comment: EdgeR glmLRT vs glmQLFTest
8 months ago Gordon Smyth 50k
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1.4k
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Comment: Comment: Question about filterByExpr function edgeR
9 months ago Gordon Smyth 50k
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1
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1.4k
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Comment: Comment: Question about filterByExpr function edgeR
9 months ago Gordon Smyth 50k
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1
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1.4k
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Comment: Comment: Question about filterByExpr function edgeR
9 months ago Gordon Smyth 50k
0
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593
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Comment: Comment: Is it possible to extract the expression of a single group without making compar
9 months ago Gordon Smyth 50k
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0
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662
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Comment: Comment: Can CAMERA analyze just one particular pathway
9 months ago Gordon Smyth 50k
1
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1
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823
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Comment: Comment: limma output for epic array methylation data
9 months ago Gordon Smyth 50k
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1
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1.1k
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Comment: Comment: All three of the sites where genomeinfodbdata R packages are stored appear to be
9 months ago Gordon Smyth 50k
2
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2
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1.1k
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Comment: Comment: All three of the sites where genomeinfodbdata R packages are stored appear to be
9 months ago Gordon Smyth 50k
0
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0
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1.4k
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Comment: Comment: removing the batch effect for vst counts and defining the batches in removeBatch
9 months ago Gordon Smyth 50k
0
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1
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881
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Comment: Comment: Recommendation for large.n in filterByExpr
9 months ago Gordon Smyth 50k
0
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0
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1.8k
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Comment: Comment: can negative value microarray matrix data analysed by limma directly
9 months ago Gordon Smyth 50k
3
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1.1k
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Comment: Comment: Custom design for scRNA DGE with pseudobulking
9 months ago Gordon Smyth 50k
1
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0
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793
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Comment: Comment: Adding a group of samples reduces DEGs in other groups
9 months ago Gordon Smyth 50k
1
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1
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793
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Comment: Comment: Adding a group of samples reduces DEGs in other groups
9 months ago Gordon Smyth 50k
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1
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1.4k
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Comment: Comment: RNA seq differential expression analysis for large sample size
9 months ago Gordon Smyth 50k
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1
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943
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Comment: Comment: Limma multi-group, nested analysis with aggregation
9 months ago Gordon Smyth 50k
1,724 results • Page 3 of 35
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