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Answer: Answer: How to correctly adjust for gender in edgeR
3 days ago Gordon Smyth 50k
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238
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Answer: Answer: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
5 days ago Gordon Smyth 50k
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267
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Answer: Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
9 days ago Gordon Smyth 50k
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319
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Answer: Answer: Method to find pathways different between 2 groups
12 days ago Gordon Smyth 50k
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403
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Answer: Answer: limma Intercept vs No-intercept models completely changing DMR results?
15 days ago Gordon Smyth 50k
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267
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Answer: Answer: package goseq seems to be not available on the latest version of R
15 days ago • updated 14 days ago Gordon Smyth 50k
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175
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Answer: Answer: NEED FOR NESSASORY HELP
16 days ago Gordon Smyth 50k
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155
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Answer: Answer: Gene-by-sample covariates in limma
16 days ago Gordon Smyth 50k
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2
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624
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Answer: Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
16 days ago • updated 15 days ago Gordon Smyth 50k
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214
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Answer: Answer: Improving the design matrices vignette in RNAseq123
22 days ago Gordon Smyth 50k
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204
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Answer: Answer: Citation for edgeR user guide
25 days ago Gordon Smyth 50k
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190
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Answer: Answer: limma-voom: Calculate the log-fold change in gene expression within a sample
26 days ago Gordon Smyth 50k
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1.3k
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
28 days ago • updated 27 days ago Gordon Smyth 50k
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239
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Answer: Answer: RNAseq:Technical replicates from different batches
29 days ago Gordon Smyth 50k
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469
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Answer: Answer: FilterByExpr low counts with small sample size
29 days ago Gordon Smyth 50k
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147
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Answer: Answer: How to make DGEList and design matrix by edgeR package
29 days ago Gordon Smyth 50k
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212
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Answer: Answer: Finding DEGs by using edgeR
29 days ago Gordon Smyth 50k
3
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307
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Answer: Answer: Log-cpm values from limma
29 days ago Gordon Smyth 50k
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363
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Answer: Answer: Methylation Analysis experiment design using Limma
4 weeks ago Gordon Smyth 50k
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208
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Answer: Answer: Differentially expressed genes in monocle pseudotime
4 weeks ago Gordon Smyth 50k
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368
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Answer: Answer: permutation test in edgeR
4 weeks ago • updated 27 days ago Gordon Smyth 50k
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369
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Answer: Answer: Why is my gene not significantly differentially expressed?
4 weeks ago Gordon Smyth 50k
2
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975
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Answer: Answer: Light difference when using coef vs omit a group when compare 3 groups.
5 weeks ago Gordon Smyth 50k
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186
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Answer: Answer: Limma design matrix only showing 3/4 treatments?
6 weeks ago Gordon Smyth 50k
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463
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Answer: Answer: Using a change in a continuous explanatory variable to test changes in gene expr
6 weeks ago Gordon Smyth 50k
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197
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Answer: Answer: edgeR analysis: glm functions and offset matrix
6 weeks ago Gordon Smyth 50k
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448
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Answer: Answer: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
6 weeks ago Gordon Smyth 50k
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2.0k
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Answer: Answer: The difference when using Limma compare between 3 conditions vs 2 conditions
7 weeks ago • updated 6 weeks ago Gordon Smyth 50k
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372
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Answer: Answer: Doing comparison of RNA-seq data using EdgeR
7 weeks ago Gordon Smyth 50k
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413
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Answer: Answer: Differing results from plotMDS and PCAtools
7 weeks ago Gordon Smyth 50k
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0
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564
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Answer: Answer: Microarray Limma Model fitting and DEG
7 weeks ago Gordon Smyth 50k
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564
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Answer: Answer: Microarray Limma Model fitting and DEG
7 weeks ago Gordon Smyth 50k
2
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990
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Answer: Answer: limma models out of memory issue on Slurm HPC
7 weeks ago • updated 6 weeks ago Gordon Smyth 50k
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252
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Answer: Answer: Using splicing junction counts with edgeR/limma-voom
8 weeks ago Gordon Smyth 50k
2
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1
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737
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Answer: Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
8 weeks ago Gordon Smyth 50k
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310
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Answer: Answer: edgeR, 3 x 2 design with a batch effect and contrasts
8 weeks ago Gordon Smyth 50k
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487
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Answer: Answer: DEG Filtering
9 weeks ago • updated 8 weeks ago Gordon Smyth 50k
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305
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Answer: Answer: RNAseq analysis
9 weeks ago Gordon Smyth 50k
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275
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Answer: Answer: between lane normalization upper quantile
9 weeks ago Gordon Smyth 50k
2
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289
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Answer: Answer: Question about extracting co-efficients for pairwise comparisons in edgeR
9 weeks ago Gordon Smyth 50k
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458
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Answer: Answer: DESeq2 filtering vs edgeR filtering
9 weeks ago Gordon Smyth 50k
1
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0
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439
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Answer: Answer: Cross-species analysis - how to compute the mid parent value?
10 weeks ago Gordon Smyth 50k
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560
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Answer: Answer: limma: vooma mean-variance trend and data filtration
10 weeks ago Gordon Smyth 50k
2
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1
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540
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Answer: Answer: Constrast for Time Course Experiments using Limma
10 weeks ago Gordon Smyth 50k
1
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0
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508
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Answer: Answer: Right way to pseudobulk donors across replicates in edgeR
10 weeks ago Gordon Smyth 50k
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242
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Answer: Answer: Different results from DGE using different subgroups in model.matrix
10 weeks ago Gordon Smyth 50k
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793
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Answer: Answer: Strange logFC values in differential methylation site anslysis
10 weeks ago Gordon Smyth 50k
2
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0
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504
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Answer: Answer: DGE analysis with LIMMA
11 weeks ago Gordon Smyth 50k
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0
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287
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Answer: Answer: ExactTest vs QLFTest
11 weeks ago Gordon Smyth 50k
0
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1
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321
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Answer: Answer: Differential enrichment analysis
11 weeks ago Gordon Smyth 50k
2,679 results • Page 1 of 54
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