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Answer: Answer: Library size normalization in methylation count analysis
9 weeks ago Gordon Smyth 50k
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2
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551
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Comment: Comment: limma fo continous variables
9 weeks ago Gordon Smyth 50k
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1
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551
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Comment: Comment: limma fo continous variables
10 weeks ago Gordon Smyth 50k
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1
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551
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Answer: Answer: limma fo continous variables
10 weeks ago Gordon Smyth 50k
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1
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284
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Answer: Answer: limma model matrix questions
10 weeks ago Gordon Smyth 50k
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403
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Comment: Comment: edgeR: DEGs in a CRD factorial (2x2x2)
10 weeks ago Gordon Smyth 50k
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1
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312
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Answer: Answer: Limma with replicates at different time points
10 weeks ago Gordon Smyth 50k
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215
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Answer: Answer: Main effect on multiple comparisons in limma
10 weeks ago Gordon Smyth 50k
3
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1
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388
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Comment: Comment: Confusion about LFC using contrasts weights in EdgeR
10 weeks ago Gordon Smyth 50k
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1
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403
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Answer: Answer: edgeR: DEGs in a CRD factorial (2x2x2)
10 weeks ago Gordon Smyth 50k
1
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1
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403
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Comment: Comment: edgeR: DEGs in a CRD factorial (2x2x2)
10 weeks ago Gordon Smyth 50k
2
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1
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388
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Answer: Answer: Confusion about LFC using contrasts weights in EdgeR
10 weeks ago Gordon Smyth 50k
2
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0
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290
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Answer: Answer: Normalization factors when there is a possible unidirectional expression
11 weeks ago Gordon Smyth 50k
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1
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622
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Comment: Comment: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
11 weeks ago Gordon Smyth 50k
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622
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Comment: Comment: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
11 weeks ago Gordon Smyth 50k
0
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622
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Answer: Answer: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
11 weeks ago Gordon Smyth 50k
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622
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Comment: Comment: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
11 weeks ago Gordon Smyth 50k
0
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0
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344
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Comment: Comment: CAMERA + Gene Ontology Gene Sets
11 weeks ago Gordon Smyth 50k
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344
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Answer: Answer: CAMERA + Gene Ontology Gene Sets
11 weeks ago Gordon Smyth 50k
3
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416
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Answer: Answer: How does one test for interactions in EdgeR?
11 weeks ago Gordon Smyth 50k
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0
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364
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Answer: Answer: limma with interaction term
11 weeks ago Gordon Smyth 50k
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364
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Comment: Comment: limma with interaction term
11 weeks ago Gordon Smyth 50k
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0
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582
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Comment: Comment: filtering lowly expressed reads
12 weeks ago Gordon Smyth 50k
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346
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Comment: Comment: Nested paired design
12 weeks ago Gordon Smyth 50k
3
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289
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Answer: Answer: Design matrix after RUVg correction
12 weeks ago Gordon Smyth 50k
2
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323
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Answer: Answer: Longitudinal analysis in Limma
12 weeks ago Gordon Smyth 50k
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0
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323
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Comment: Comment: Longitudinal analysis in Limma
12 weeks ago Gordon Smyth 50k
0
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1
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346
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Answer: Answer: Nested paired design
12 weeks ago Gordon Smyth 50k
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322
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Answer: Answer: How to get normalized values for methylation counts in edgeR
12 weeks ago Gordon Smyth 50k
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1
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402
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Comment: Comment: limma design model for categorical variable
12 weeks ago • updated 11 weeks ago Gordon Smyth 50k
2
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1
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283
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Answer: Answer: Limma design for 3 replicated time courses comparing treatment vs placebo
12 weeks ago Gordon Smyth 50k
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1
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402
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Answer: Answer: limma design model for categorical variable
12 weeks ago Gordon Smyth 50k
2
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0
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348
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Comment: Comment: voom with quality weights after RUV correction
12 weeks ago Gordon Smyth 50k
2
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1
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348
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Answer: Answer: voom with quality weights after RUV correction
12 weeks ago Gordon Smyth 50k
0
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1
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252
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Answer: Answer: Pairwise analysis of DESeq result and limma result
12 weeks ago Gordon Smyth 50k
1
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0
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6.1k
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Comment: Comment: Rsubread::featureCounts extremely slow on some annotations
12 weeks ago Gordon Smyth 50k
1
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1
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425
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Comment: Comment: goseq, warning and strange plot from nullp
3 months ago Gordon Smyth 50k
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1
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425
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Answer: Answer: goseq, warning and strange plot from nullp
3 months ago Gordon Smyth 50k
1
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1
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975
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Answer: Answer: Packages don't update, but no error or warning is thrown
3 months ago Gordon Smyth 50k
1
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1
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336
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Answer: Answer: Longitudinal analysis in Limma
3 months ago Gordon Smyth 50k
0
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1
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437
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Comment: Comment: Adjusting featureCounts settings in Galaxy for miRNA overlaps
3 months ago Gordon Smyth 50k
0
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0
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437
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Comment: Comment: Adjusting featureCounts settings in Galaxy for miRNA overlaps
3 months ago Gordon Smyth 50k
0
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0
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437
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Answer: Answer: Adjusting featureCounts settings in Galaxy for miRNA overlaps
3 months ago Gordon Smyth 50k
2
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1
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292
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Answer: Answer: Using limma for controlling age variable
3 months ago Gordon Smyth 50k
3
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1
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271
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Answer: Answer: Question about DMRcate
3 months ago Gordon Smyth 50k
1
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0
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563
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Comment: Comment: readDGE in edgeR giving me path names as sample names
3 months ago Gordon Smyth 50k
1
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1
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747
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Comment: Comment: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
3 months ago Gordon Smyth 50k
1
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1
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563
views
Comment: Comment: readDGE in edgeR giving me path names as sample names
3 months ago Gordon Smyth 50k
1
vote
1
reply
747
views
Answer: Answer: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
3 months ago Gordon Smyth 50k
0
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2
replies
535
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Answer: Answer: edgeR error "Design matrix not of full rank"
3 months ago Gordon Smyth 50k
5,081 results • Page 3 of 102
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