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Comment: Comment: Strange logFC values in differential methylation site anslysis
11 weeks ago Gordon Smyth 50k
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Comment: Comment: Strange logFC values in differential methylation site anslysis
11 weeks ago Gordon Smyth 50k
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247
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Answer: Answer: Different results from DGE using different subgroups in model.matrix
12 weeks ago • updated 11 weeks ago Gordon Smyth 50k
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818
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Comment: Comment: Strange logFC values in differential methylation site anslysis
12 weeks ago • updated 11 weeks ago Gordon Smyth 50k
0
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818
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Answer: Answer: Strange logFC values in differential methylation site anslysis
12 weeks ago Gordon Smyth 50k
2
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520
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Answer: Answer: DGE analysis with LIMMA
12 weeks ago Gordon Smyth 50k
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305
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Answer: Answer: ExactTest vs QLFTest
12 weeks ago Gordon Smyth 50k
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340
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Comment: Comment: Interactions in batches of varying size with different number of replicates usin
12 weeks ago Gordon Smyth 50k
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340
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Comment: Comment: Interactions in batches of varying size with different levels of replicates usin
12 weeks ago Gordon Smyth 50k
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333
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Answer: Answer: Differential enrichment analysis
12 weeks ago Gordon Smyth 50k
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818
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Comment: Comment: Strange logFC values in differential methylation site anslysis
12 weeks ago Gordon Smyth 50k
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362
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Answer: Answer: Error in featureCounts matrix
3 months ago Gordon Smyth 50k
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540
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Comment: Comment: Library size normalization in methylation count analysis
3 months ago Gordon Smyth 50k
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540
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Comment: Comment: Library size normalization in methylation count analysis
3 months ago Gordon Smyth 50k
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540
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Answer: Answer: Library size normalization in methylation count analysis
3 months ago Gordon Smyth 50k
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2
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601
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Comment: Comment: limma fo continous variables
3 months ago Gordon Smyth 50k
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601
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Comment: Comment: limma fo continous variables
3 months ago Gordon Smyth 50k
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601
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Answer: Answer: limma fo continous variables
3 months ago Gordon Smyth 50k
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327
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Answer: Answer: limma model matrix questions
3 months ago Gordon Smyth 50k
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450
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Comment: Comment: edgeR: DEGs in a CRD factorial (2x2x2)
3 months ago Gordon Smyth 50k
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362
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Answer: Answer: Limma with replicates at different time points
3 months ago Gordon Smyth 50k
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235
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Answer: Answer: Main effect on multiple comparisons in limma
3 months ago Gordon Smyth 50k
3
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441
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Comment: Comment: Confusion about LFC using contrasts weights in EdgeR
3 months ago Gordon Smyth 50k
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450
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Answer: Answer: edgeR: DEGs in a CRD factorial (2x2x2)
3 months ago Gordon Smyth 50k
1
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450
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Comment: Comment: edgeR: DEGs in a CRD factorial (2x2x2)
3 months ago Gordon Smyth 50k
2
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441
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Answer: Answer: Confusion about LFC using contrasts weights in EdgeR
3 months ago Gordon Smyth 50k
2
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327
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Answer: Answer: Normalization factors when there is a possible unidirectional expression
3 months ago Gordon Smyth 50k
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694
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Comment: Comment: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
3 months ago Gordon Smyth 50k
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694
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Comment: Comment: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
3 months ago Gordon Smyth 50k
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694
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Answer: Answer: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
3 months ago Gordon Smyth 50k
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694
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Comment: Comment: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
3 months ago Gordon Smyth 50k
0
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397
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Comment: Comment: CAMERA + Gene Ontology Gene Sets
3 months ago Gordon Smyth 50k
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1
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397
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Answer: Answer: CAMERA + Gene Ontology Gene Sets
3 months ago Gordon Smyth 50k
3
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1
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520
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Answer: Answer: How does one test for interactions in EdgeR?
3 months ago Gordon Smyth 50k
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401
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Answer: Answer: limma with interaction term
3 months ago Gordon Smyth 50k
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1
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401
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Comment: Comment: limma with interaction term
3 months ago Gordon Smyth 50k
0
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0
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660
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Comment: Comment: filtering lowly expressed reads
3 months ago Gordon Smyth 50k
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375
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Comment: Comment: Nested paired design
3 months ago Gordon Smyth 50k
3
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331
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Answer: Answer: Design matrix after RUVg correction
3 months ago Gordon Smyth 50k
2
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1
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358
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Answer: Answer: Longitudinal analysis in Limma
3 months ago Gordon Smyth 50k
0
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0
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358
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Comment: Comment: Longitudinal analysis in Limma
3 months ago Gordon Smyth 50k
0
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1
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375
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Answer: Answer: Nested paired design
3 months ago Gordon Smyth 50k
1
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1
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360
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Answer: Answer: How to get normalized values for methylation counts in edgeR
3 months ago Gordon Smyth 50k
1
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1
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467
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Comment: Comment: limma design model for categorical variable
3 months ago Gordon Smyth 50k
2
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1
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309
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Answer: Answer: Limma design for 3 replicated time courses comparing treatment vs placebo
3 months ago Gordon Smyth 50k
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467
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Answer: Answer: limma design model for categorical variable
3 months ago Gordon Smyth 50k
2
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0
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398
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Comment: Comment: voom with quality weights after RUV correction
3 months ago Gordon Smyth 50k
2
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1
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398
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Answer: Answer: voom with quality weights after RUV correction
3 months ago Gordon Smyth 50k
0
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1
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328
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Answer: Answer: Pairwise analysis of DESeq result and limma result
3 months ago Gordon Smyth 50k
1
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0
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6.2k
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Comment: Comment: Rsubread::featureCounts extremely slow on some annotations
3 months ago Gordon Smyth 50k
5,095 results • Page 3 of 102
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