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Answer: Answer: error while running DMRcate
11 months ago James W. MacDonald 67k
0
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878
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Answer: Answer: How to correct for known and surrogate variables in DESeq2?
11 months ago James W. MacDonald 67k
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793
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Comment: Comment: Manual creation of qPCRset does not work
11 months ago James W. MacDonald 67k
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402
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Answer: Answer: MEDIPS - covariate
11 months ago James W. MacDonald 67k
1
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2
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781
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Answer: Answer: Need help generating BSgenome and orgdb
11 months ago James W. MacDonald 67k
1
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1
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940
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Comment: Comment: Question about creating custom organism database with AnnotationForge
11 months ago James W. MacDonald 67k
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1.3k
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Answer: Answer: [Bug] Segfault in edgeR::cpm
11 months ago James W. MacDonald 67k
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1
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1.3k
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Comment: Comment: Subsetting Range Summarized Experiment
11 months ago James W. MacDonald 67k
1
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1
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533
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Answer: Answer: Error creating SPIA data for KEGG Orthology (KO) Database KEGG xml files
11 months ago James W. MacDonald 67k
1
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0
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601
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Answer: Answer: Multiple comparison using DESeq2
11 months ago James W. MacDonald 67k
0
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1
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692
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Comment: Comment: Tximport Error - transcripts in quant files are not the same as tx2gene
11 months ago James W. MacDonald 67k
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692
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Answer: Answer: Tximport Error - transcripts in quant files are not the same as tx2gene
11 months ago James W. MacDonald 67k
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1
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1.3k
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Comment: Comment: Subsetting Range Summarized Experiment
11 months ago James W. MacDonald 67k
2
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1.3k
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Answer: Answer: Subsetting Range Summarized Experiment
11 months ago James W. MacDonald 67k
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1
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1.3k
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Comment: Comment: minfi, limma, adjusting for cell counts - integrating the resoults of estimateC
11 months ago James W. MacDonald 67k
0
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0
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876
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Answer: Answer: enrichPlot error when plotting topGO results
11 months ago James W. MacDonald 67k
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0
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1.1k
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Comment: Comment: Help with orgdb for non-model species via makeOrgPackageFromNCBI
11 months ago James W. MacDonald 67k
1
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1
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1.1k
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Answer: Answer: Help with orgdb for non-model species via makeOrgPackageFromNCBI
11 months ago James W. MacDonald 67k
0
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1
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978
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Answer: Answer: minfi differential methylation analysis errors
11 months ago James W. MacDonald 67k
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1
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1.3k
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Comment: Comment: Annotation Dbi Error: unable to find an inherited method for function 'x' for si
11 months ago James W. MacDonald 67k
1
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1
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736
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Answer: Answer: tximeta error with vroom
11 months ago James W. MacDonald 67k
2
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1
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1.3k
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Answer: Answer: Annotation Dbi Error: unable to find an inherited method for function 'x' for si
11 months ago James W. MacDonald 67k
0
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1
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1.3k
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Answer: Answer: minfi, limma, adjusting for cell counts - integrating the resoults of estimateC
11 months ago James W. MacDonald 67k
1
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1
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1.6k
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Comment: Comment: DESeq2 gene length normalisation
12 months ago James W. MacDonald 67k
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1
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1.6k
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Comment: Comment: DESeq2 gene length normalisation
12 months ago James W. MacDonald 67k
0
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1
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1.6k
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Comment: Comment: DESeq2 gene length normalisation
12 months ago James W. MacDonald 67k
0
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1
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1.6k
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Answer: Answer: DESeq2 gene length normalisation
12 months ago James W. MacDonald 67k
0
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0
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853
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Answer: Answer: Installing Gpart
12 months ago James W. MacDonald 67k
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1
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1.2k
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Comment: Comment: DuplicateCorrelation() block by duplicate sample or by cell line ?
12 months ago James W. MacDonald 67k
1
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1
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1.2k
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Answer: Answer: DuplicateCorrelation() block by duplicate sample or by cell line ?
12 months ago James W. MacDonald 67k
1
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1
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552
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Answer: Answer: SeqSQC R library, functions PCA and IBD not working
12 months ago James W. MacDonald 67k
0
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0
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986
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Answer: Answer: EPIC v2 demo data from blood samples
12 months ago James W. MacDonald 67k
2
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1
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1.4k
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Answer: Answer: DiffBind returns different grey lists every time I run dba.blacklist even if I s
12 months ago James W. MacDonald 67k
0
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1
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1.3k
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Comment: Comment: Error MakeOrgPackagefromNCBI
12 months ago James W. MacDonald 67k
0
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0
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480
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Answer: Answer: how to extract specific gene coordinates by passing a list of genes using homo
12 months ago James W. MacDonald 67k
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0
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9.6k
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Comment: Comment: Exporting DESeq2 filtered results
12 months ago James W. MacDonald 67k
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1
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9.6k
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Comment: Comment: Exporting DESeq2 filtered results
12 months ago James W. MacDonald 67k
1
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1
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1.3k
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Answer: Answer: Error MakeOrgPackagefromNCBI
12 months ago James W. MacDonald 67k
0
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0
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1.0k
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Comment: Comment: Biostrings error at retrieving protein sequences
12 months ago James W. MacDonald 67k
1
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0
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1.0k
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Answer: Answer: Biostrings error at retrieving protein sequences
12 months ago James W. MacDonald 67k
0
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0
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604
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Answer: Answer: Extract LRT results for each comparison
12 months ago James W. MacDonald 67k
1
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0
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1.3k
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Comment: Comment: Interpretation of LRT results
12 months ago James W. MacDonald 67k
0
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1
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588
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Comment: Comment: bug in block.plsda from mixOmics?
12 months ago James W. MacDonald 67k
0
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0
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492
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Answer: Answer: Is SeqSQC compatible with hg38?
12 months ago James W. MacDonald 67k
1
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0
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696
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Answer: Answer: DiffBind - how to prep the sample matrix when multiple bam files are used by MAC
12 months ago James W. MacDonald 67k
0
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0
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931
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Comment: Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar
12 months ago James W. MacDonald 67k
0
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2
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931
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Answer: Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar
12 months ago James W. MacDonald 67k
0
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1
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741
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Comment: Comment: DESeq2, results(dds, name = <reference>) interpretation results
12 months ago James W. MacDonald 67k
0
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0
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692
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Comment: Comment: DeSeq2 design fails (full model matrix is less than full rank)
12 months ago James W. MacDonald 67k
0
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1
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741
views
Answer: Answer: DESeq2, results(dds, name = <reference>) interpretation results
12 months ago James W. MacDonald 67k
8,581 results • Page 12 of 172
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