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242
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Answer: Answer: When to use edgeR or limma
9 days ago James W. MacDonald 68k
0
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909
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Comment: Comment: Joining different datasets and analyzing using the group-specific condition effe
10 days ago James W. MacDonald 68k
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1
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909
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Comment: Comment: Joining different datasets and analyzing using the group-specific condition effe
11 days ago James W. MacDonald 68k
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288
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Answer: Answer: problem reading bam files into nucleR
7 weeks ago James W. MacDonald 68k
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1
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290
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Comment: Comment: Getting a large intercept with DESeq2
10 weeks ago James W. MacDonald 68k
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1
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290
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Answer: Answer: Getting a large intercept with DESeq2
10 weeks ago James W. MacDonald 68k
2
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585
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Comment: Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
11 weeks ago James W. MacDonald 68k
2
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1
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185
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Answer: Answer: Suppress warning in RHDF5 write
11 weeks ago James W. MacDonald 68k
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318
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Answer: Answer: Integration: Paired-end vs healthy single-end from a different source
11 weeks ago James W. MacDonald 68k
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1
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4.7k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
3 months ago James W. MacDonald 68k
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1
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4.7k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
3 months ago James W. MacDonald 68k
0
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1
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4.7k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
3 months ago James W. MacDonald 68k
0
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1
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4.7k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
3 months ago James W. MacDonald 68k
0
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1
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348
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Answer: Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
3 months ago James W. MacDonald 68k
0
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348
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Comment: Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
3 months ago James W. MacDonald 68k
0
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0
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198
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Answer: Answer: Gatins Set error
3 months ago James W. MacDonald 68k
0
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0
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650
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Comment: Comment: GO.db and others package Download failure
4 months ago James W. MacDonald 68k
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1
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650
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Comment: Comment: GO.db and others package Download failure
4 months ago James W. MacDonald 68k
0
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1
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650
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Comment: Comment: GO.db and others package Download failure
4 months ago James W. MacDonald 68k
0
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1
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650
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Answer: Answer: GO.db and others package Download failure
4 months ago James W. MacDonald 68k
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1.5k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
4 months ago James W. MacDonald 68k
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1
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1.5k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
4 months ago James W. MacDonald 68k
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0
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228
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Answer: Answer: Differential motif analysis
4 months ago James W. MacDonald 68k
1
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0
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463
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Comment: Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
4 months ago James W. MacDonald 68k
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1
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553
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Comment: Comment: DESeq2 interactions
4 months ago James W. MacDonald 68k
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1
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312
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Answer: Answer: readBam vs read_bam_insert_metrics
4 months ago James W. MacDonald 68k
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1
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463
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Answer: Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
4 months ago James W. MacDonald 68k
1
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2
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412
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Answer: Answer: ROAST compare results with complex design
4 months ago James W. MacDonald 68k
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0
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1.2k
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Comment: Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
4 months ago James W. MacDonald 68k
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1
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1.2k
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Comment: Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
4 months ago James W. MacDonald 68k
0
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0
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295
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Answer: Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel
4 months ago James W. MacDonald 68k
2
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1
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1.2k
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Answer: Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
5 months ago James W. MacDonald 68k
0
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0
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13k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
5 months ago James W. MacDonald 68k
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0
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13k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
5 months ago James W. MacDonald 68k
0
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1
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2.1k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
5 months ago James W. MacDonald 68k
0
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1
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773
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
5 months ago James W. MacDonald 68k
0
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1
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773
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
5 months ago James W. MacDonald 68k
0
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1
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773
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
5 months ago James W. MacDonald 68k
0
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1
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773
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
5 months ago James W. MacDonald 68k
0
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1
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773
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Answer: Answer: Getting way too many DEGs with LRT for time-series RNA-seq!
5 months ago James W. MacDonald 68k
0
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0
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441
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Comment: Comment: Create consensusMatrix for codon bases
5 months ago James W. MacDonald 68k
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0
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885
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
5 months ago James W. MacDonald 68k
1
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1
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301
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Answer: Answer: The default value of 'abundanceCol'
5 months ago James W. MacDonald 68k
1
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1
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885
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
5 months ago James W. MacDonald 68k
2
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1
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885
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Answer: Answer: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
5 months ago James W. MacDonald 68k
0
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1
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885
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
5 months ago James W. MacDonald 68k
0
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0
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246
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Answer: Answer: muffz.plot2
5 months ago James W. MacDonald 68k
0
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0
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590
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Comment: Comment: Feedback needed on new user-friendly BED file tool
5 months ago James W. MacDonald 68k
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2
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597
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Answer: Answer: DEP R-package run_app ("TMT") spits this error: "Error: 'imputeMethods' is not a
6 months ago James W. MacDonald 68k
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0
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471
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Comment: Comment: ORFik: spliced 5utr regions
6 months ago James W. MacDonald 68k
8,873 results • Page 1 of 178
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