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1
vote
0
replies
90
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Answer:
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
21 hours ago
James W. MacDonald
68k
0
votes
0
replies
91
views
Answer:
Answer: batch effect removal for agilent microarray data
22 hours ago
James W. MacDonald
68k
2
votes
1
reply
920
views
Answer:
Answer: Store Matrix in DataFrame Cell
6 days ago
James W. MacDonald
68k
0
votes
1
reply
446
views
Comment:
Comment: For some reason I can't update BiocManager to 3.20
6 days ago
James W. MacDonald
68k
0
votes
2
replies
426
views
Answer:
Answer: DESeq2 adujsted p-value cutoff seemingly not working
12 days ago
James W. MacDonald
68k
1
vote
1
reply
727
views
Answer:
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
13 days ago
James W. MacDonald
68k
0
votes
0
replies
252
views
Answer:
Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes
14 days ago
James W. MacDonald
68k
0
votes
1
reply
300
views
Answer:
Answer: displaying the differential expression with deseq2 over 4X2 samples with the in
15 days ago
James W. MacDonald
68k
0
votes
0
replies
164
views
Answer:
Answer: I am having issues with bowtie2_build
20 days ago
James W. MacDonald
68k
1
vote
0
replies
421
views
Answer:
Answer: Selection of correct coefficients or contrasts in DESeq2
25 days ago
James W. MacDonald
68k
1
vote
1
reply
936
views
Comment:
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
25 days ago
James W. MacDonald
68k
0
votes
0
replies
147
views
Answer:
Answer: Unable to find sample sheet file for ChAMP methylation data analysis
26 days ago
James W. MacDonald
68k
0
votes
0
replies
134
views
Answer:
Answer: affymetrix
28 days ago
James W. MacDonald
68k
0
votes
0
replies
780
views
Comment:
Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
4 weeks ago
James W. MacDonald
68k
0
votes
0
replies
780
views
Comment:
Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
4 weeks ago
James W. MacDonald
68k
0
votes
1
reply
780
views
Comment:
Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
4 weeks ago
James W. MacDonald
68k
2
votes
2
replies
780
views
Answer:
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
4 weeks ago
James W. MacDonald
68k
0
votes
0
replies
150
views
Answer:
Answer: XCMS Data Processing
4 weeks ago
James W. MacDonald
68k
0
votes
0
replies
404
views
Comment:
Comment: Error using useMart or useEnsembl
4 weeks ago
James W. MacDonald
68k
0
votes
1
reply
404
views
Answer:
Answer: Error using useMart or useEnsembl
4 weeks ago
James W. MacDonald
68k
2
votes
0
replies
567
views
Answer:
Answer: Error in download.file for TCGAutils::symbolsToRanges
4 weeks ago
James W. MacDonald
68k
0
votes
0
replies
495
views
Comment:
Comment: Biomart and ensembl not working?
4 weeks ago
James W. MacDonald
68k
0
votes
1
reply
495
views
Answer:
Answer: Biomart and ensembl not working?
4 weeks ago
James W. MacDonald
68k
0
votes
0
replies
137
views
Answer:
Answer: Unknown gene transcripts after annotatr
4 weeks ago
James W. MacDonald
68k
0
votes
0
replies
317
views
Answer:
Answer: DESeq2 Heatmap
5 weeks ago
James W. MacDonald
68k
0
votes
0
replies
128
views
Answer:
Answer: Improve performance of qusage aggregateGeneSet
5 weeks ago
James W. MacDonald
68k
0
votes
0
replies
115
views
Answer:
Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000
5 weeks ago
James W. MacDonald
68k
0
votes
0
replies
358
views
Comment:
Comment: iam not able to do retrive data using GEOquery R package
5 weeks ago
James W. MacDonald
68k
0
votes
1
reply
358
views
Answer:
Answer: iam not able to do retrive data using GEOquery R package
5 weeks ago
James W. MacDonald
68k
0
votes
0
replies
719
views
Comment:
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
5 weeks ago
James W. MacDonald
68k
0
votes
0
replies
179
views
Answer:
Answer: Installation error for Rsamtools.
5 weeks ago
James W. MacDonald
68k
0
votes
0
replies
719
views
Comment:
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
5 weeks ago
James W. MacDonald
68k
1
vote
1
reply
719
views
Answer:
Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
5 weeks ago
James W. MacDonald
68k
0
votes
0
replies
893
views
Comment:
Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D
5 weeks ago
James W. MacDonald
68k
0
votes
0
replies
975
views
Comment:
Comment: Deseq2, enrichGO and ensembl ID
5 weeks ago
James W. MacDonald
68k
0
votes
1
reply
893
views
Answer:
Answer: Why did PCA plots look exactly the same after adjusting for batch covariate in D
5 weeks ago
James W. MacDonald
68k
0
votes
1
reply
297
views
Comment:
Comment: Newbie Question - adding metadata to an analysis
6 weeks ago
James W. MacDonald
68k
0
votes
1
reply
311
views
Answer:
Answer: Diffbind interpretation of data - fold change
6 weeks ago
James W. MacDonald
68k
0
votes
0
replies
152
views
Answer:
Answer: No preprocessing allowed for EPICv2 with DMRcate
6 weeks ago
James W. MacDonald
68k
0
votes
0
replies
610
views
Comment:
Comment: How do I fix an odd voom plot in a combined dataset?
6 weeks ago
James W. MacDonald
68k
0
votes
1
reply
297
views
Answer:
Answer: Newbie Question - adding metadata to an analysis
6 weeks ago
James W. MacDonald
68k
0
votes
0
replies
322
views
Comment:
Comment: MissMethyl failed to use gometh function for EPICv2
6 weeks ago
James W. MacDonald
68k
0
votes
1
reply
322
views
Answer:
Answer: MissMethyl failed to use gometh function for EPICv2
6 weeks ago
James W. MacDonald
68k
0
votes
0
replies
870
views
Comment:
Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
8 weeks ago
James W. MacDonald
68k
0
votes
1
reply
870
views
Comment:
Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
8 weeks ago
James W. MacDonald
68k
1
vote
1
reply
2.1k
views
Comment:
Comment: nightmare to make custom txdb for genomes from ToxoDB
8 weeks ago
James W. MacDonald
68k
0
votes
1
reply
2.1k
views
Answer:
Answer: nightmare to make custom txdb for genomes from ToxoDB
8 weeks ago
James W. MacDonald
68k
0
votes
0
replies
610
views
Comment:
Comment: Deseq2 Design
9 weeks ago
James W. MacDonald
68k
0
votes
0
replies
313
views
Answer:
Answer: Build error on kunpeng2 Linux aarch64
9 weeks ago
James W. MacDonald
68k
0
votes
0
replies
1.9k
views
Comment:
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
9 weeks ago
James W. MacDonald
68k
8,743 results • Page
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