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Answer: Answer: DESeq2 sizefactors counfounded with biological treatment
7 days ago James W. MacDonald 67k
2
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171
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Answer: Answer: bioconductor packages on bioconda
8 days ago James W. MacDonald 67k
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1
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222
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Answer: Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome
8 days ago James W. MacDonald 67k
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1
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210
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Answer: Answer: Epic v2 Annotation CpG_maf source?
8 days ago James W. MacDonald 67k
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448
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Comment: Comment: Deseq2 res Function
9 days ago James W. MacDonald 67k
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281
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Answer: Answer: Struggle with the replicates of epic array data
9 days ago James W. MacDonald 67k
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343
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Comment: Comment: Help with RSEM counts: do I transpose matrix?
11 days ago James W. MacDonald 67k
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343
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Answer: Answer: Help with RSEM counts: do I transpose matrix?
11 days ago James W. MacDonald 67k
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619
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Comment: Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
11 days ago James W. MacDonald 67k
1
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0
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132
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Answer: Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
11 days ago James W. MacDonald 67k
1
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1
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619
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Comment: Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
11 days ago James W. MacDonald 67k
1
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1
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619
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Answer: Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
12 days ago James W. MacDonald 67k
0
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0
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187
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Answer: Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di
12 days ago James W. MacDonald 67k
1
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0
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456
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Answer: Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
12 days ago James W. MacDonald 67k
0
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0
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124
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Answer: Answer: HilBertVis install error
12 days ago James W. MacDonald 67k
1
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1
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241
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Answer: Answer: Differene between the Wald and LRT test for time-series gene expression data
13 days ago James W. MacDonald 67k
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375
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Comment: Comment: Handling Epic Array Data
14 days ago James W. MacDonald 67k
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1
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375
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Answer: Answer: Handling Epic Array Data
14 days ago James W. MacDonald 67k
2
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282
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Answer: Answer: preprocessIllumina error with EPICv2 array
14 days ago James W. MacDonald 67k
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0
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132
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Answer: Answer: UniProt.ws query loading indefinitely
15 days ago James W. MacDonald 67k
0
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0
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349
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Comment: Comment: Package needs internet access
15 days ago James W. MacDonald 67k
1
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2
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349
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Answer: Answer: Package needs internet access
15 days ago James W. MacDonald 67k
0
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1
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349
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Comment: Comment: Package needs internet access
15 days ago James W. MacDonald 67k
2
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0
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485
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Answer: Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
15 days ago James W. MacDonald 67k
0
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1
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136
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Answer: Answer: Limma Interaction Effect with Covariates
15 days ago James W. MacDonald 67k
2
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0
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166
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Answer: Answer: Using Affymetrix Custom Array
15 days ago James W. MacDonald 67k
0
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203
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Answer: Answer: Harmonizing Gene Annotations for Meta-Analysis of GSE68183 and GSE80178
16 days ago James W. MacDonald 67k
0
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0
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245
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Answer: Answer: How to get The evolutionary conservation scores for lncRNAs by the phastCons100w
16 days ago James W. MacDonald 67k
1
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0
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841
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Answer: Answer: [How to construct a model.matrix ]
20 days ago James W. MacDonald 67k
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1.6k
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Comment: Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
21 days ago James W. MacDonald 67k
1
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1
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1.6k
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Comment: Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
21 days ago James W. MacDonald 67k
0
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1
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1.6k
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Comment: Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
28 days ago James W. MacDonald 67k
0
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1
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1.0k
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Comment: Comment: Combining RNAseq and microarray data using edgeR/limma-voom
28 days ago James W. MacDonald 67k
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1
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1.0k
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Comment: Comment: Combining RNAseq and microarray data using edgeR/limma-voom
28 days ago James W. MacDonald 67k
0
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1
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1.0k
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Answer: Answer: Combining RNAseq and microarray data using edgeR/limma-voom
29 days ago James W. MacDonald 67k
0
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1
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696
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Answer: Answer: GOstats kegg analysis in wheat - help - none of the objects in the first column
29 days ago James W. MacDonald 67k
0
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1
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1.3k
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Comment: Comment: Question about using LRT test for time course experiments with DESeq2
29 days ago James W. MacDonald 67k
0
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1
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1.3k
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Comment: Comment: Question about using LRT test for time course experiments with DESeq2
29 days ago James W. MacDonald 67k
0
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0
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439
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Answer: Answer: single cell RNA seq pseudobulk batch correction
4 weeks ago James W. MacDonald 67k
0
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0
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433
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Answer: Answer: Normalized counts to be used in decoupleR from deseq2 results
4 weeks ago James W. MacDonald 67k
1
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1
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1.6k
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Comment: Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
4 weeks ago James W. MacDonald 67k
0
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1
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1.6k
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Answer: Answer: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
4 weeks ago James W. MacDonald 67k
0
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0
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416
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Comment: Comment: Why are internal functions in the package manual?
4 weeks ago James W. MacDonald 67k
0
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1
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416
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Comment: Comment: Why are internal functions in the package manual?
4 weeks ago James W. MacDonald 67k
0
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1
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416
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Comment: Comment: Why are internal functions in the package manual?
4 weeks ago James W. MacDonald 67k
0
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1
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416
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Comment: Comment: Why are internal functions in the package manual?
4 weeks ago James W. MacDonald 67k
0
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1
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416
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Answer: Answer: Why are internal functions in the package manual?
4 weeks ago James W. MacDonald 67k
0
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1
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1.3k
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Comment: Comment: Question about using LRT test for time course experiments with DESeq2
4 weeks ago James W. MacDonald 67k
1
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0
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681
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Comment: Comment: Error: 'term_similarity_from_KEGG' not found in simplifyEnrichment package
4 weeks ago James W. MacDonald 67k
0
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0
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226
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Answer: Answer: edit y axis scale in errBarchart?
4 weeks ago James W. MacDonald 67k
8,679 results • Page 1 of 174
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