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Comment: Comment: Math expression in shapeCustom legend in EnhancedVolcano
14 hours ago James W. MacDonald 65k
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101
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Comment: Comment: Math expression in shapeCustom legend in EnhancedVolcano
14 hours ago James W. MacDonald 65k
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101
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Comment: Comment: Math expression in shapeCustom legend in EnhancedVolcano
14 hours ago James W. MacDonald 65k
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1
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101
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Comment: Comment: Math expression in shapeCustom legend in EnhancedVolcano
14 hours ago James W. MacDonald 65k
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259
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Comment: Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
17 hours ago James W. MacDonald 65k
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101
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Answer: Answer: Math expression in shapeCustom legend in EnhancedVolcano
17 hours ago James W. MacDonald 65k
0
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1
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259
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Comment: Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
18 hours ago James W. MacDonald 65k
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146
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Comment: Comment: How to retrieve gene ontology GO class from gene list?
20 hours ago James W. MacDonald 65k
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2
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259
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Comment: Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
22 hours ago James W. MacDonald 65k
2
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1
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259
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Answer: Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
23 hours ago James W. MacDonald 65k
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168
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Comment: Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
23 hours ago James W. MacDonald 65k
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148
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Comment: Comment: get BM error
1 day ago James W. MacDonald 65k
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228
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Comment: Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
1 day ago James W. MacDonald 65k
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148
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Answer: Answer: get BM error
1 day ago James W. MacDonald 65k
2
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1
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146
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Answer: Answer: How to retrieve gene ontology GO class from gene list?
1 day ago James W. MacDonald 65k
0
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1
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146
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Comment: Comment: How to retrieve gene ontology GO class?
2 days ago James W. MacDonald 65k
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228
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Comment: Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
3 days ago James W. MacDonald 65k
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158
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Comment: Comment: Error EPICv2 ChAMP
3 days ago James W. MacDonald 65k
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158
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Answer: Answer: Error EPICv2 ChAMP
3 days ago James W. MacDonald 65k
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86
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Answer: Answer: FDR via q-value
3 days ago James W. MacDonald 65k
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228
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Answer: Answer: Error for AnnotationForge makeOrgPackageFromNCBI function
3 days ago James W. MacDonald 65k
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103
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Comment: Comment: Error retrieving ensembl gene id using biomaRt...
6 days ago James W. MacDonald 65k
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103
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Answer: Answer: Error retrieving ensembl gene id using biomaRt...
6 days ago James W. MacDonald 65k
1
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143
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Answer: Answer: OrgDb for maize
7 days ago James W. MacDonald 65k
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119
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Answer: Answer: SNP locus package for mouse?
9 days ago James W. MacDonald 65k
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155
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Answer: Answer: flowStats Search Error
9 days ago James W. MacDonald 65k
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101
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Comment: Comment: what is the sampleFiles
9 days ago James W. MacDonald 65k
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854
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
15 days ago James W. MacDonald 65k
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854
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
15 days ago James W. MacDonald 65k
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2
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854
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Answer: Answer: Convert Seurat Object to Summarised Experiment or ExpressionSet
15 days ago James W. MacDonald 65k
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461
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Comment: Comment: GSVA on separate healthy and disease datasets
15 days ago James W. MacDonald 65k
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399
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Comment: Comment: Not fully paired differential gene expression analysis
15 days ago James W. MacDonald 65k
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0
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326
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Answer: Answer: Why is my gene not significantly differentially expressed?
15 days ago James W. MacDonald 65k
2
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399
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Answer: Answer: Not fully paired differential gene expression analysis
16 days ago James W. MacDonald 65k
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0
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134
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Answer: Answer: BAM write error in HTSeqGenie
16 days ago James W. MacDonald 65k
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1
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461
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Answer: Answer: GSVA on separate healthy and disease datasets
16 days ago James W. MacDonald 65k
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1
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407
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Comment: Comment: Obtaining pheno data from CEL files
17 days ago James W. MacDonald 65k
2
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1
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292
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Answer: Answer: permutation test in edgeR
17 days ago James W. MacDonald 65k
0
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164
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Answer: Answer: How can I create a GO plot with ggpubr and clusterProfiler libraries (begginer)
17 days ago James W. MacDonald 65k
1
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0
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229
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Comment: Comment: Lib sizes in the DGE object are different from original lib sizes
20 days ago James W. MacDonald 65k
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291
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Comment: Comment: Help with design.matrix
20 days ago James W. MacDonald 65k
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229
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Answer: Answer: Lib sizes in the DGE object are different from original lib sizes
20 days ago James W. MacDonald 65k
1
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0
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203
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Answer: Answer: MethylKit read issue
20 days ago James W. MacDonald 65k
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1
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291
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Answer: Answer: Help with design.matrix
20 days ago James W. MacDonald 65k
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0
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148
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Comment: Comment: What to the log 2 fold changes mean using LRT on time course in DESeq2
20 days ago James W. MacDonald 65k
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148
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Answer: Answer: What to the log 2 fold changes mean using LRT on time course in DESeq2
20 days ago James W. MacDonald 65k
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0
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155
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Answer: Answer: DESeq2 - Missing values in count matrix
21 days ago James W. MacDonald 65k
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407
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Comment: Comment: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
22 days ago James W. MacDonald 65k
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407
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Answer: Answer: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
22 days ago James W. MacDonald 65k
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1
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174
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Answer: Answer: voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
22 days ago James W. MacDonald 65k
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