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Answer: Answer: ROAST compare results with complex design
6 days ago James W. MacDonald 68k
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591
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Comment: Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
6 days ago James W. MacDonald 68k
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591
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Comment: Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
10 days ago James W. MacDonald 68k
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113
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Answer: Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel
11 days ago James W. MacDonald 68k
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591
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Answer: Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
12 days ago James W. MacDonald 68k
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12k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
13 days ago James W. MacDonald 68k
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12k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
18 days ago James W. MacDonald 68k
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1
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726
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
18 days ago James W. MacDonald 68k
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1
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390
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
19 days ago James W. MacDonald 68k
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1
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390
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
20 days ago James W. MacDonald 68k
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1
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390
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
20 days ago James W. MacDonald 68k
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1
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390
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
21 days ago James W. MacDonald 68k
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1
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390
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Answer: Answer: Getting way too many DEGs with LRT for time-series RNA-seq!
21 days ago James W. MacDonald 68k
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0
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145
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Comment: Comment: Create consensusMatrix for codon bases
26 days ago James W. MacDonald 68k
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0
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536
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
26 days ago James W. MacDonald 68k
1
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1
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181
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Answer: Answer: The default value of 'abundanceCol'
28 days ago James W. MacDonald 68k
1
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1
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536
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
5 weeks ago James W. MacDonald 68k
2
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1
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536
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Answer: Answer: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
5 weeks ago James W. MacDonald 68k
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1
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536
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
5 weeks ago James W. MacDonald 68k
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129
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Answer: Answer: muffz.plot2
5 weeks ago James W. MacDonald 68k
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0
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269
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Comment: Comment: Feedback needed on new user-friendly BED file tool
5 weeks ago James W. MacDonald 68k
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2
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480
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Answer: Answer: DEP R-package run_app ("TMT") spits this error: "Error: 'imputeMethods' is not a
6 weeks ago James W. MacDonald 68k
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183
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Comment: Comment: ORFik: spliced 5utr regions
6 weeks ago James W. MacDonald 68k
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494
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Answer: Answer: MEDIPS.meth gives table with NA rpkm values
7 weeks ago James W. MacDonald 68k
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564
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Answer: Answer: cytolib uses outdated boost call
7 weeks ago James W. MacDonald 68k
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0
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881
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Comment: Comment: Install old version of DESeq2
8 weeks ago James W. MacDonald 68k
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419
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Answer: Answer: discrepancy in IDs from file and tx2gene (IDs don't match)
8 weeks ago James W. MacDonald 68k
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1.6k
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Answer: Answer: RNA-seq: TPM batch effect correction
10 weeks ago James W. MacDonald 68k
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5.1k
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Comment: Comment: Analysis of clusters of a heatmap with enrichGO of clusterProfiler: choice fo t
10 weeks ago James W. MacDonald 68k
1
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1
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5.1k
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Answer: Answer: Analysis of clusters of a heatmap with enrichGO of clusterProfiler: choice fo t
10 weeks ago James W. MacDonald 68k
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0
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1.0k
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Answer: Answer: TopGO question
10 weeks ago James W. MacDonald 68k
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0
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933
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Answer: Answer: Starting with a clean bioconductor rstudio container
11 weeks ago James W. MacDonald 68k
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1
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1.0k
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Comment: Comment: TopGO question
11 weeks ago James W. MacDonald 68k
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0
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1.1k
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Answer: Answer: error from library(IlluminaHumanMethylationMSAmanifest)
3 months ago James W. MacDonald 68k
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1
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829
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Comment: Comment: Position of the legend object in complexHeatmap
3 months ago James W. MacDonald 68k
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1
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829
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Answer: Answer: Position of the legend object in complexHeatmap
3 months ago James W. MacDonald 68k
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0
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412
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Answer: Answer: lncRNA functional annotation package
3 months ago James W. MacDonald 68k
1
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0
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601
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Answer: Answer: Biomart server error
3 months ago James W. MacDonald 68k
2
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1
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1.9k
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Comment: Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
3 months ago James W. MacDonald 68k
1
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1.2k
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Comment: Comment: Heatmap of rnaseq data with z-score scale
3 months ago James W. MacDonald 68k
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1
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1.2k
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Answer: Answer: Heatmap of rnaseq data with z-score scale
3 months ago James W. MacDonald 68k
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0
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925
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Answer: Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin
3 months ago James W. MacDonald 68k
2
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1
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1.9k
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Answer: Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
3 months ago James W. MacDonald 68k
1
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0
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518
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Comment: Comment: AnnotationHub/ExperimentHub resources backup
3 months ago James W. MacDonald 68k
2
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1
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518
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Answer: Answer: AnnotationHub/ExperimentHub resources backup
3 months ago James W. MacDonald 68k
3
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0
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536
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Answer: Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change
3 months ago James W. MacDonald 68k
1
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0
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1.2k
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Comment: Comment: Heatmap of a transformed deseq object with pheatmap
3 months ago James W. MacDonald 68k
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1
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1.2k
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Answer: Answer: Heatmap of a transformed deseq object with pheatmap
3 months ago James W. MacDonald 68k
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1
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1.2k
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Comment: Comment: Heatmap of a transformed deseq object with pheatmap
3 months ago James W. MacDonald 68k
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0
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351
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Answer: Answer: Error in readCodelinkSet function
3 months ago James W. MacDonald 68k
8,846 results • Page 1 of 177
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