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255
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Answer: Answer: problem reading bam files into nucleR
5 weeks ago James W. MacDonald 68k
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1
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260
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Comment: Comment: Getting a large intercept with DESeq2
8 weeks ago James W. MacDonald 68k
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260
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Answer: Answer: Getting a large intercept with DESeq2
8 weeks ago James W. MacDonald 68k
2
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489
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Comment: Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
9 weeks ago James W. MacDonald 68k
2
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1
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167
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Answer: Answer: Suppress warning in RHDF5 write
9 weeks ago James W. MacDonald 68k
0
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0
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303
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Answer: Answer: Integration: Paired-end vs healthy single-end from a different source
9 weeks ago James W. MacDonald 68k
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1
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4.7k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
11 weeks ago James W. MacDonald 68k
0
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1
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4.7k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
11 weeks ago James W. MacDonald 68k
0
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1
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4.7k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
11 weeks ago James W. MacDonald 68k
0
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1
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4.7k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
11 weeks ago James W. MacDonald 68k
0
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1
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333
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Answer: Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
12 weeks ago James W. MacDonald 68k
0
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0
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333
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Comment: Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
12 weeks ago James W. MacDonald 68k
0
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186
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Answer: Answer: Gatins Set error
3 months ago James W. MacDonald 68k
0
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0
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562
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Comment: Comment: GO.db and others package Download failure
3 months ago James W. MacDonald 68k
0
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1
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562
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Comment: Comment: GO.db and others package Download failure
3 months ago James W. MacDonald 68k
0
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1
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562
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Comment: Comment: GO.db and others package Download failure
3 months ago James W. MacDonald 68k
0
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1
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562
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Answer: Answer: GO.db and others package Download failure
3 months ago James W. MacDonald 68k
0
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0
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1.4k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
3 months ago James W. MacDonald 68k
0
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1
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1.4k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
3 months ago James W. MacDonald 68k
0
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0
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200
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Answer: Answer: Differential motif analysis
3 months ago James W. MacDonald 68k
1
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0
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449
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Comment: Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
3 months ago James W. MacDonald 68k
0
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1
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528
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Comment: Comment: DESeq2 interactions
3 months ago James W. MacDonald 68k
0
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1
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293
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Answer: Answer: readBam vs read_bam_insert_metrics
4 months ago • updated 3 months ago James W. MacDonald 68k
0
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1
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449
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Answer: Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
4 months ago James W. MacDonald 68k
1
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2
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398
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Answer: Answer: ROAST compare results with complex design
4 months ago James W. MacDonald 68k
0
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1.2k
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Comment: Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
4 months ago James W. MacDonald 68k
0
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1
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1.2k
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Comment: Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
4 months ago James W. MacDonald 68k
0
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0
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280
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Answer: Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel
4 months ago James W. MacDonald 68k
2
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1
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1.2k
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Answer: Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
4 months ago James W. MacDonald 68k
0
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0
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13k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
4 months ago James W. MacDonald 68k
0
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0
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13k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
4 months ago James W. MacDonald 68k
0
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1
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2.0k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
4 months ago James W. MacDonald 68k
0
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1
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724
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
4 months ago James W. MacDonald 68k
0
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1
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724
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
4 months ago James W. MacDonald 68k
0
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1
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724
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
4 months ago James W. MacDonald 68k
0
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1
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724
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
4 months ago James W. MacDonald 68k
0
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1
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724
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Answer: Answer: Getting way too many DEGs with LRT for time-series RNA-seq!
4 months ago James W. MacDonald 68k
0
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0
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421
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Comment: Comment: Create consensusMatrix for codon bases
5 months ago James W. MacDonald 68k
0
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0
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831
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
5 months ago James W. MacDonald 68k
1
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1
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288
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Answer: Answer: The default value of 'abundanceCol'
5 months ago James W. MacDonald 68k
1
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1
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831
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
5 months ago James W. MacDonald 68k
2
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1
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831
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Answer: Answer: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
5 months ago James W. MacDonald 68k
0
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1
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831
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
5 months ago James W. MacDonald 68k
0
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0
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233
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Answer: Answer: muffz.plot2
5 months ago James W. MacDonald 68k
0
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0
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543
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Comment: Comment: Feedback needed on new user-friendly BED file tool
5 months ago James W. MacDonald 68k
0
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2
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580
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Answer: Answer: DEP R-package run_app ("TMT") spits this error: "Error: 'imputeMethods' is not a
5 months ago James W. MacDonald 68k
0
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0
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419
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Comment: Comment: ORFik: spliced 5utr regions
5 months ago James W. MacDonald 68k
0
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0
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626
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Answer: Answer: MEDIPS.meth gives table with NA rpkm values
5 months ago James W. MacDonald 68k
0
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0
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668
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Answer: Answer: cytolib uses outdated boost call
5 months ago James W. MacDonald 68k
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0
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1.2k
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Comment: Comment: Install old version of DESeq2
6 months ago James W. MacDonald 68k
8,870 results • Page 1 of 178
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