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Answer: Answer: readDGE in edgeR giving me path names as sample names
2.1 years ago James W. MacDonald 68k
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891
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Answer: Answer: ConsensusClusterPlus dosesn't make an output file
2.1 years ago James W. MacDonald 68k
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1
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1.8k
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Comment: Comment: edgeR error "Design matrix not of full rank"
2.1 years ago James W. MacDonald 68k
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1.4k
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Answer: Answer: Comparing relative expression of a conserved gene between distantly related spec
2.1 years ago James W. MacDonald 68k
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1.8k
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Comment: Comment: edgeR error "Design matrix not of full rank"
2.1 years ago James W. MacDonald 68k
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2.1k
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Answer: Answer: When should I correct for batch effects
2.1 years ago James W. MacDonald 68k
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1.7k
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Answer: Answer: ClusterProfiler result question: Why are all many of my resulting p.adjust value
2.1 years ago James W. MacDonald 68k
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1.1k
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Answer: Answer: visualizing GSEA showCategory question
2.1 years ago James W. MacDonald 68k
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840
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Answer: Answer: Dimensionality reduction visualization
2.1 years ago James W. MacDonald 68k
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1.7k
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Comment: Comment: Merging of Human and Mouse SingleCellExperiment Objects Error
2.1 years ago James W. MacDonald 68k
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1.7k
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Answer: Answer: Merging of Human and Mouse SingleCellExperiment Objects Error
2.1 years ago James W. MacDonald 68k
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1
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2.1k
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Comment: Comment: Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
2.1 years ago James W. MacDonald 68k
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2.1k
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Comment: Comment: Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
2.1 years ago James W. MacDonald 68k
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4.9k
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Comment: Comment: Problem installing package, version of dependency issue
2.1 years ago James W. MacDonald 68k
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1
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4.9k
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Comment: Comment: Problem installing package, version of dependency issue
2.1 years ago James W. MacDonald 68k
0
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1
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4.9k
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Comment: Comment: Problem installing package, version of dependency issue
2.1 years ago James W. MacDonald 68k
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1
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4.9k
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Comment: Comment: Problem installing package, version of dependency issue
2.1 years ago James W. MacDonald 68k
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4.9k
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Answer: Answer: Problem installing package, version of dependency issue
2.1 years ago James W. MacDonald 68k
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0
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677
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Answer: Answer: [DESEQ2] When to average biological replicates for hierarchical clustering
2.1 years ago James W. MacDonald 68k
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1
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672
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Answer: Answer: How to interpret log2fold values when using numeric contrasts in DESEQ2?
2.1 years ago James W. MacDonald 68k
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9.8k
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Comment: Comment: Normalised counts from RUVg in RUVSeq
2.1 years ago James W. MacDonald 68k
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1.5k
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Answer: Answer: Enrichement with clusterProfiler and biomart
2.1 years ago James W. MacDonald 68k
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934
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Comment: Comment: makeOrgPackageFromNCBI generates an empty database?
2.1 years ago James W. MacDonald 68k
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934
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Answer: Answer: makeOrgPackageFromNCBI generates an empty database?
2.1 years ago James W. MacDonald 68k
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0
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809
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Answer: Answer: Looking for a MSigDB chip file
2.1 years ago James W. MacDonald 68k
2
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1
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1.0k
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Answer: Answer: edgeR - Design matrix for comparisons of all and subsets of samples
2.1 years ago James W. MacDonald 68k
1
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1
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1.7k
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Answer: Answer: Batch-resolved visualization after RUVg normalization?
2.1 years ago James W. MacDonald 68k
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2
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1.5k
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Comment: Comment: distanceToNearest
2.1 years ago James W. MacDonald 68k
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1.5k
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Answer: Answer: distanceToNearest
2.1 years ago James W. MacDonald 68k
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0
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4.0k
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Answer: Answer: ChAMP - obtaining beta values using EPICv2 annotation
2.1 years ago James W. MacDonald 68k
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1
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1.5k
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Comment: Comment: distanceToNearest
2.1 years ago James W. MacDonald 68k
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1
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1.5k
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Answer: Answer: Problem with loading ensembl version 105.
2.2 years ago James W. MacDonald 68k
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1.2k
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Answer: Answer: DESeq2: the model matrix is not full rank issue
2.2 years ago James W. MacDonald 68k
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0
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1.2k
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Comment: Comment: Use of data packages in containers
2.2 years ago James W. MacDonald 68k
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1
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794
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Comment: Comment: Statistical test
2.2 years ago James W. MacDonald 68k
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2.0k
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Answer: Answer: DESeq2 collinearity, adjusting for covariates, and the ground truth
2.2 years ago James W. MacDonald 68k
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0
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1.3k
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Comment: Comment: Unexpected results for a differential expression analysis between males and fema
2.2 years ago James W. MacDonald 68k
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1
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1.2k
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Answer: Answer: Use of data packages in containers
2.2 years ago James W. MacDonald 68k
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0
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1.3k
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Comment: Comment: Unexpected results for a differential expression analysis between males and fema
2.2 years ago James W. MacDonald 68k
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2
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1.3k
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Answer: Answer: Unexpected results for a differential expression analysis between males and fema
2.2 years ago James W. MacDonald 68k
0
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1
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4.4k
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Comment: Comment: How to remove X & Y chromosome genes from RNAseq data
2.2 years ago James W. MacDonald 68k
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1
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3.1k
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Comment: Comment: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
2.2 years ago James W. MacDonald 68k
2
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0
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1.6k
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Answer: Answer: Txdb object for UCSC hs1 (T2T-CHM13)
2.2 years ago James W. MacDonald 68k
1
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1
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2.1k
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Answer: Answer: Reduce single cell experiment size to use as reference for annotation with Singl
2.2 years ago James W. MacDonald 68k
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0
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911
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Answer: Answer: Running DESeq on normalized data
2.2 years ago James W. MacDonald 68k
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1
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2.0k
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Answer: Answer: StringDB: Cannot use payload mechanism to colour nodes
2.2 years ago James W. MacDonald 68k
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1
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3.6k
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Answer: Answer: EnhancedVolcano with labels based on log2 Fold Change
2.2 years ago James W. MacDonald 68k
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1
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1.2k
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Answer: Answer: Linear Model Fitting and Colinearity
2.2 years ago James W. MacDonald 68k
2
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1
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4.2k
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Answer: Answer: Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DE
2.2 years ago James W. MacDonald 68k
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0
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930
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Answer: Answer: Can't download Bioconductor
2.2 years ago James W. MacDonald 68k
8,876 results • Page 15 of 178
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