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1
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1.2k
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Answer:
Answer: Problems with analysing Agilent G3 GEx Rat V2 chips
3.2 years ago
James W. MacDonald
67k
2
votes
1
reply
1.4k
views
Answer:
Answer: DESeq2, geometric means using posCounts
3.2 years ago
James W. MacDonald
67k
0
votes
0
replies
884
views
Answer:
Answer: dependance for conumee ‘IlluminaHumanMethylationEPICanno.ilm10b2.hg19’ package i
3.2 years ago
James W. MacDonald
67k
1
vote
1
reply
5.0k
views
Comment:
Comment: Issues with scaling down enrichplot's dotplot and gseaplot2 plots
3.2 years ago
James W. MacDonald
67k
0
votes
1
reply
5.0k
views
Answer:
Answer: Issues with scaling down enrichplot's dotplot and gseaplot2 plots
3.2 years ago
James W. MacDonald
67k
0
votes
0
replies
720
views
Answer:
Answer: How to overlap granges objects by gene name
3.2 years ago
James W. MacDonald
67k
0
votes
1
reply
1.4k
views
Answer:
Answer: genefilter not available for R v4.1/arm64
3.2 years ago
James W. MacDonald
67k
0
votes
0
replies
3.1k
views
Comment:
Comment: mapping mouse ENSEMBL ids to human gene symbol
3.2 years ago
James W. MacDonald
67k
4
votes
1
reply
18k
views
Answer:
Answer: about MapIds function
3.2 years ago
James W. MacDonald
67k
1
vote
1
reply
6.7k
views
Comment:
Comment: package to manipulate GTF files
3.2 years ago
James W. MacDonald
67k
2
votes
1
reply
6.7k
views
Answer:
Answer: package to manipulate GTF files
3.2 years ago
James W. MacDonald
67k
0
votes
1
reply
3.6k
views
Answer:
Answer: Problem with DESeq2 installation using in R 1.4.1717
3.2 years ago
James W. MacDonald
67k
0
votes
0
replies
15k
views
Comment:
Comment: Error:The design matrix has the same number of samples and coefficients to fit,
3.2 years ago
James W. MacDonald
67k
0
votes
1
reply
8.0k
views
Comment:
Comment: error in relevel.default - 'relevel' only for (unordered) factors when setting b
3.2 years ago
James W. MacDonald
67k
0
votes
1
reply
8.0k
views
Comment:
Comment: error in relevel.default - 'relevel' only for (unordered) factors when setting b
3.2 years ago
James W. MacDonald
67k
0
votes
1
reply
8.0k
views
Answer:
Answer: error in relevel.default - 'relevel' only for (unordered) factors when setting b
3.2 years ago
James W. MacDonald
67k
1
vote
1
reply
2.5k
views
Comment:
Comment: How to get annotations for all genes that overlap a region with annotatePeak
3.2 years ago
James W. MacDonald
67k
0
votes
1
reply
2.5k
views
Comment:
Comment: How to get annotations for all genes that overlap a region with annotatePeak
3.2 years ago
James W. MacDonald
67k
0
votes
1
reply
2.5k
views
Comment:
Comment: How to get annotations for all genes that overlap a region with annotatePeak
3.2 years ago
James W. MacDonald
67k
0
votes
0
replies
949
views
Answer:
Answer: confusion about Deseq2 wording in the vignette ( additive model with main effect
3.2 years ago
James W. MacDonald
67k
0
votes
0
replies
1.3k
views
Answer:
Answer: DESeq2 Paired Analysis--Tumor vs Normal
3.2 years ago
James W. MacDonald
67k
1
vote
0
replies
1.2k
views
Answer:
Answer: readVcf(remoteFile, "hg19", "region") works on macos, fails on linux and in dock
3.2 years ago
James W. MacDonald
67k
0
votes
0
replies
1.6k
views
Comment:
Comment: How to correlate bp and Chr columns in the corresponding RSID column?
3.2 years ago
James W. MacDonald
67k
0
votes
1
reply
1.6k
views
Answer:
Answer: How to correlate bp and Chr columns in the corresponding RSID column?
3.2 years ago
James W. MacDonald
67k
0
votes
0
replies
794
views
Answer:
Answer: Pseudoalignment for repetitive sequences
3.2 years ago
James W. MacDonald
67k
0
votes
1
reply
2.5k
views
Answer:
Answer: How to get annotations for all genes that overlap a region with annotatePeak
3.2 years ago
James W. MacDonald
67k
0
votes
1
reply
1.4k
views
Comment:
Comment: pdInfoBuilder created problematic package for Affymetrix chip tiling array
3.3 years ago
James W. MacDonald
67k
2
votes
2
replies
1.4k
views
Comment:
Comment: pdInfoBuilder created problematic package for Affymetrix chip tiling array
3.3 years ago
James W. MacDonald
67k
0
votes
1
reply
1.4k
views
Answer:
Answer: pdInfoBuilder created problematic package for Affymetrix chip tiling array
3.3 years ago
James W. MacDonald
67k
2
votes
0
replies
3.8k
views
Answer:
Answer: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m31) is not TRUE
3.3 years ago
James W. MacDonald
67k
2
votes
0
replies
1.3k
views
Answer:
Answer: importing RSEM isoform to Gene Name with tximport
3.3 years ago
James W. MacDonald
67k
0
votes
1
reply
1.3k
views
Comment:
Comment: importing RSEM isoform to Gene Name with tximport
3.3 years ago
James W. MacDonald
67k
0
votes
1
reply
1.9k
views
Answer:
Answer: error in file(file, "rt") when reading in sample sheet using DESeqDataSetFromHTS
3.3 years ago
James W. MacDonald
67k
1
vote
0
replies
996
views
Answer:
Answer: How to sort out error in gdcCEAnalysis function of GDCRNATools R package?
3.3 years ago
James W. MacDonald
67k
3
votes
1
reply
1.1k
views
Answer:
Answer: R NanoStringDiff: DE analysis, from 2 group comparison method how "logFC" genera
3.3 years ago
James W. MacDonald
67k
1
vote
1
reply
1.7k
views
Comment:
Comment: Spline-fitted data analysis in edgeR question
3.3 years ago
James W. MacDonald
67k
1
vote
1
reply
1.7k
views
Comment:
Comment: Spline-fitted data analysis in edgeR question
3.3 years ago
James W. MacDonald
67k
1
vote
1
reply
1.7k
views
Comment:
Comment: Spline-fitted data analysis in edgeR question
3.3 years ago
James W. MacDonald
67k
0
votes
0
replies
1.9k
views
Comment:
Comment: Error of read in large vcf file using readVcf
3.3 years ago
James W. MacDonald
67k
0
votes
2
replies
1.9k
views
Answer:
Answer: Error of read in large vcf file using readVcf
3.3 years ago
James W. MacDonald
67k
0
votes
1
reply
3.3k
views
Comment:
Comment: Grange object subsetting using seqnames
3.3 years ago
James W. MacDonald
67k
0
votes
1
reply
3.3k
views
Comment:
Comment: Grange object subsetting using seqnames
3.3 years ago
James W. MacDonald
67k
0
votes
1
reply
3.3k
views
Answer:
Answer: Grange object subsetting using seqnames
3.3 years ago
James W. MacDonald
67k
0
votes
0
replies
1.1k
views
Answer:
Answer: Differentially expressed genes across three different conditions
3.3 years ago
James W. MacDonald
67k
0
votes
0
replies
3.4k
views
Answer:
Answer: EnsDb.Mmusculus.v79 : Failed to switch to UCSC style
3.3 years ago
James W. MacDonald
67k
0
votes
0
replies
970
views
Answer:
Answer: Tool for simulating bulk RNA-Seq from single cell data
3.3 years ago
James W. MacDonald
67k
0
votes
1
reply
1.1k
views
Comment:
Comment: How to write a script for identifying associate gene id
3.3 years ago
James W. MacDonald
67k
0
votes
1
reply
1.1k
views
Answer:
Answer: How to write a script for identifying associate gene id
3.3 years ago
James W. MacDonald
67k
0
votes
0
replies
3.5k
views
Answer:
Answer: BiocManager.rdb is corrupt
3.3 years ago
James W. MacDonald
67k
1
vote
1
reply
1.1k
views
Answer:
Answer: what does " * " denote under the strand column of the GRanges object file outpu
3.3 years ago
James W. MacDonald
67k
8,585 results • Page
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