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Answer: A: DESeq2 swap ensembl gene id rownames with gene symbol column
4.8 years ago James W. MacDonald 67k
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1.9k
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Comment: C: Problem installing BSgenome packages with R 3.6.1
4.8 years ago James W. MacDonald 67k
0
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1
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1.1k
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Comment: C: nucleR ERROR unable to find an inherited method for function peakDetection for s
4.8 years ago James W. MacDonald 67k
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1
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1.1k
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Answer: A: nucleR ERROR unable to find an inherited method for function peakDetection for s
4.8 years ago James W. MacDonald 67k
0
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1
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1.9k
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Comment: C: Problem installing BSgenome packages with R 3.6.1
4.8 years ago James W. MacDonald 67k
0
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459
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Comment: C: Ensembl v75 annotation - difference between non-coding and intron
4.8 years ago James W. MacDonald 67k
0
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0
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864
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Answer: A: Input files for Affymetrix platform
4.8 years ago James W. MacDonald 67k
0
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1
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864
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Comment: C: Input files for Affymetrix platform
4.8 years ago James W. MacDonald 67k
0
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2.0k
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Comment: C: Error while opening Mart with biomaRt package
4.8 years ago James W. MacDonald 67k
0
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1
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1.9k
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Answer: A: Problem installing BSgenome packages with R 3.6.1
4.8 years ago James W. MacDonald 67k
0
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0
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580
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Answer: A: How to control the text size for colAttributes in the annotation bar for dbaplot
4.8 years ago James W. MacDonald 67k
0
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1
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1.5k
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Answer: A: 3' microarray data using Affy - can't find cdf file, please help!
4.8 years ago James W. MacDonald 67k
1
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1
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1.6k
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Comment: C: affycoretools::annotateEset(eset, pd.ht.hgu133.plus.pm) return error
4.8 years ago James W. MacDonald 67k
2
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1
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1.6k
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Answer: A: affycoretools::annotateEset(eset, pd.ht.hgu133.plus.pm) return error
4.8 years ago James W. MacDonald 67k
2
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1
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3.7k
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Answer: A: Understanding voom behavior when model matrix is used with/without intercept for
4.8 years ago James W. MacDonald 67k
0
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0
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1.3k
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Comment: C: Can't find library BSgenome.Mmulatta.UCSC for latest genome (mmul10)
4.8 years ago James W. MacDonald 67k
1
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3
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1.3k
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Answer: A: Can't find library BSgenome.Mmulatta.UCSC for latest genome (mmul10)
4.8 years ago James W. MacDonald 67k
0
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0
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1.4k
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Comment: C: How to change ensembl ids to gene names before analysis using count table?
4.9 years ago James W. MacDonald 67k
0
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1
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2.9k
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Answer: A: featureCount error - cannot identify gene_id
4.9 years ago James W. MacDonald 67k
0
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0
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841
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Comment: C: Confusion about Design Matrix ,Contrast Matrix and logFC values in limma package
4.9 years ago James W. MacDonald 67k
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0
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621
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Comment: C: Too small unreasonable p-values from limma
4.9 years ago James W. MacDonald 67k
1
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0
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621
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Answer: A: Too small unreasonable p-values from limma
4.9 years ago James W. MacDonald 67k
1
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0
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841
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Answer: A: Confusion about Design Matrix ,Contrast Matrix and logFC values in limma package
4.9 years ago James W. MacDonald 67k
0
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1
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561
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Answer: A: DESeq2: Is it possible to have incomplete pairs of samples?
4.9 years ago James W. MacDonald 67k
1
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0
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1.0k
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Answer: A: Difference between Fold Changes from EdgeR glmLRTest and directly calculated fol
4.9 years ago James W. MacDonald 67k
0
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0
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2.0k
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Comment: C: How to adjust and align timepoints on x-axis in the ggplot2
4.9 years ago James W. MacDonald 67k
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0
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2.4k
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Answer: A: How to overcome negative values obtained from vst for downstream analysis ( calc
4.9 years ago James W. MacDonald 67k
0
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0
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2.4k
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Comment: C: How to overcome error when computing Bray-Curtis dissimilarity (DESEq2)
4.9 years ago James W. MacDonald 67k
0
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1
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1.7k
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Comment: C: Relations between average expression and fold change
4.9 years ago James W. MacDonald 67k
1
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0
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1.1k
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Comment: C: edgeR lable shuffling permutation test
4.9 years ago James W. MacDonald 67k
0
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0
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342
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Answer: A: DESeq2 not loading
4.9 years ago James W. MacDonald 67k
0
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2
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1.1k
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Answer: A: edgeR lable shuffling permutation test
4.9 years ago James W. MacDonald 67k
2
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0
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694
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Answer: A: Does "exclude" argument break BSgenome::vmatchPattern?
4.9 years ago James W. MacDonald 67k
0
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1
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1.7k
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Comment: C: Relations between average expression and fold change
4.9 years ago James W. MacDonald 67k
1
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0
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1.7k
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Comment: C: Relations between average expression and fold change
4.9 years ago James W. MacDonald 67k
0
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1
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1.6k
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Answer: A: RNA-seq from Nanopore featureCounts
4.9 years ago James W. MacDonald 67k
1
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1
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802
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Answer: A: biomaRt expected a character string of length 1
4.9 years ago James W. MacDonald 67k
0
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2
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1.7k
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Answer: A: Relations between average expression and fold change
4.9 years ago James W. MacDonald 67k
0
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0
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910
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Comment: C: hypergraph package - kcores error
4.9 years ago James W. MacDonald 67k
1
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1
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910
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Answer: A: hypergraph package - kcores error
4.9 years ago James W. MacDonald 67k
2
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1
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2.1k
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Answer: A: RNAseq read counts generated by FeatureCounts
4.9 years ago James W. MacDonald 67k
0
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0
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910
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Comment: C: hypergraph package - kcores error
4.9 years ago James W. MacDonald 67k
0
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0
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910
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Comment: C: hypergraph package - kcores error
4.9 years ago James W. MacDonald 67k
0
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2
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910
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Comment: C: hypergraph package - kcores error
4.9 years ago James W. MacDonald 67k
0
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0
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1.8k
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Comment: C: readTranscriptFeatures from genomation
4.9 years ago James W. MacDonald 67k
0
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1
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910
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Comment: C: hypergraph package - kcores error
4.9 years ago James W. MacDonald 67k
1
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1
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3.0k
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Comment: C: crlmm support for Illumina arrays with no annotation package?
4.9 years ago James W. MacDonald 67k
0
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2
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1.8k
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Answer: A: readTranscriptFeatures from genomation
4.9 years ago James W. MacDonald 67k
1
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0
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740
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Comment: C: batch correction in DESeq2 > matrix not full rank > mitigate
4.9 years ago James W. MacDonald 67k
0
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0
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1.3k
views
Answer: A: Installation of package RforProteomics had non-zero exit status? ERROR lazy load
4.9 years ago James W. MacDonald 67k
8,589 results • Page 52 of 172
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