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1
vote
1
reply
1.7k
views
Answer:
A: Is mm10.p6 available as BSgenome?
5.1 years ago
James W. MacDonald
67k
0
votes
3
replies
1.4k
views
Answer:
A: tx2gene for xenopus LAEVIS
5.1 years ago
James W. MacDonald
67k
1
vote
0
replies
888
views
Answer:
A: samples.txt?how to generate
5.1 years ago
James W. MacDonald
67k
0
votes
1
reply
5.7k
views
Comment:
C: goana and "No annotated genes found in universe" even with Entrez gene ids
5.2 years ago
James W. MacDonald
67k
0
votes
1
reply
5.7k
views
Comment:
C: goana and "No annotated genes found in universe" even with Entrez gene ids
5.2 years ago
James W. MacDonald
67k
0
votes
1
reply
5.7k
views
Comment:
C: goana and "No annotated genes found in universe" even with Entrez gene ids
5.2 years ago
James W. MacDonald
67k
3
votes
2
replies
5.7k
views
Answer:
A: goana and "No annotated genes found in universe" even with Entrez gene ids
5.2 years ago
James W. MacDonald
67k
1
vote
1
reply
846
views
Answer:
A: Disagreement between results of two 'getBM' queries
5.2 years ago
James W. MacDonald
67k
0
votes
0
replies
664
views
Comment:
C: SummarizedExperiments error for reading the data
5.2 years ago
James W. MacDonald
67k
1
vote
1
reply
2.3k
views
Comment:
C: readGAlignmentPairs fail to read paired end data
5.2 years ago
James W. MacDonald
67k
0
votes
1
reply
2.0k
views
Comment:
C: Difference of difference, paired design
5.2 years ago
James W. MacDonald
67k
0
votes
0
replies
6.2k
views
Comment:
C: [FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
5.2 years ago
James W. MacDonald
67k
1
vote
0
replies
2.7k
views
Answer:
A: ATAC-QC shiftGAlignmentsList function
5.2 years ago
James W. MacDonald
67k
1
vote
0
replies
2.0k
views
Comment:
C: Difference of difference, paired design
5.2 years ago
James W. MacDonald
67k
3
votes
1
reply
1.2k
views
Answer:
A: EdgeR - Model matrix for complex model similar to user guide 3.5 example - but m
5.2 years ago
James W. MacDonald
67k
0
votes
0
replies
2.3k
views
Comment:
C: Install a custom CDF file
5.2 years ago
James W. MacDonald
67k
0
votes
1
reply
2.0k
views
Comment:
C: Difference of difference, paired design
5.2 years ago
James W. MacDonald
67k
0
votes
1
reply
2.3k
views
Comment:
C: Install a custom CDF file
5.3 years ago
James W. MacDonald
67k
2
votes
0
replies
1.1k
views
Answer:
A: > DBdata <-dba(sampleSheet = samples) Error: object of type 'closure' is not sub
5.3 years ago
James W. MacDonald
67k
0
votes
1
reply
2.3k
views
Answer:
A: Install a custom CDF file
5.3 years ago
James W. MacDonald
67k
1
vote
1
reply
664
views
Comment:
C: SummarizedExperiments error for reading the data
5.3 years ago
James W. MacDonald
67k
0
votes
0
replies
964
views
Answer:
A: Analysis strategy - possible to use naive control group as t=0 for two treatment
5.3 years ago
James W. MacDonald
67k
0
votes
1
reply
664
views
Answer:
A: SummarizedExperiments error for reading the data
5.3 years ago
James W. MacDonald
67k
0
votes
0
replies
1.0k
views
Answer:
A: R: rma() function error
5.3 years ago
James W. MacDonald
67k
1
vote
1
reply
1.3k
views
Answer:
A: Creating contrasts which do not include the reference level in limma, edgeR or D
5.3 years ago
James W. MacDonald
67k
0
votes
0
replies
2.0k
views
Comment:
C: Why am I getting many differentially expressed genes that have no symbol or do n
5.3 years ago
James W. MacDonald
67k
0
votes
0
replies
1.1k
views
Comment:
C: Question regarding model matrix in limma.
5.3 years ago
James W. MacDonald
67k
0
votes
0
replies
1.1k
views
Comment:
C: Question regarding model matrix in limma.
5.3 years ago
James W. MacDonald
67k
0
votes
1
reply
2.0k
views
Comment:
C: Why am I getting many differentially expressed genes that have no symbol or do n
5.3 years ago
James W. MacDonald
67k
2
votes
1
reply
1.4k
views
Answer:
A: Discrepancies between topGO output and input
5.3 years ago
James W. MacDonald
67k
0
votes
2
replies
1.1k
views
Answer:
A: Question regarding model matrix in limma.
5.3 years ago
James W. MacDonald
67k
0
votes
0
replies
492
views
Answer:
A: Non-parametrical Differential Expression Analysis in Microarrays
5.3 years ago
James W. MacDonald
67k
1
vote
1
reply
1.6k
views
Answer:
A: Inconsistent results when normalizing HTA2.0 arrays at "level=core"
5.3 years ago
James W. MacDonald
67k
0
votes
0
replies
484
views
Answer:
A: Get gene level summaries from table of transcript level quantification
5.3 years ago
James W. MacDonald
67k
1
vote
2
replies
1.3k
views
Answer:
A: BioMart webservices broken?
5.3 years ago
James W. MacDonald
67k
1
vote
1
reply
1.1k
views
Answer:
A: MINFI Data merging and Normalization
5.3 years ago
James W. MacDonald
67k
3
votes
1
reply
6.5k
views
Comment:
C: biomaRt question for GO term search
5.3 years ago
James W. MacDonald
67k
0
votes
0
replies
2.1k
views
Comment:
C: Confounded design, batch effect correction (edgeR)
5.3 years ago
James W. MacDonald
67k
0
votes
0
replies
448
views
Comment:
C: To check samples in manifest that do not have IDAT files
5.3 years ago
James W. MacDonald
67k
0
votes
1
reply
2.4k
views
Comment:
C: Any efficient workaround to identify highly variable genes in Affymetrix microar
5.3 years ago
James W. MacDonald
67k
1
vote
0
replies
547
views
Comment:
C: BioMart webservice returned an invalid result
5.3 years ago
James W. MacDonald
67k
2
votes
2
replies
2.4k
views
Comment:
C: Any efficient workaround to identify highly variable genes in Affymetrix microar
5.3 years ago
James W. MacDonald
67k
0
votes
5
replies
2.1k
views
Comment:
C: Error, could not find function"file.edit", the install problem
5.3 years ago
James W. MacDonald
67k
0
votes
0
replies
1.7k
views
Comment:
C: DESeq2 Interaction Term Interpretation for Microbiome Data
5.3 years ago
James W. MacDonald
67k
0
votes
1
reply
2.1k
views
Comment:
C: Error, could not find function"file.edit", the install problem
5.3 years ago
James W. MacDonald
67k
1
vote
1
reply
1.2k
views
Comment:
C: Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
5.3 years ago
James W. MacDonald
67k
0
votes
1
reply
1.4k
views
Comment:
C: process bed/bedGraph files with the same coordinates for all the samples
5.3 years ago
James W. MacDonald
67k
0
votes
1
reply
1.4k
views
Comment:
C: process bed/bedGraph files with the same coordinates for all the samples
5.3 years ago
James W. MacDonald
67k
0
votes
1
reply
1.2k
views
Comment:
C: Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
5.3 years ago
James W. MacDonald
67k
1
vote
1
reply
1.2k
views
Answer:
A: Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
5.3 years ago
James W. MacDonald
67k
8,591 results • Page
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