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Answer: Answer: makeOrgPackageFromNCBI generates an empty database?
5 months ago James W. MacDonald 66k
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242
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Answer: Answer: Looking for a MSigDB chip file
5 months ago James W. MacDonald 66k
2
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1
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497
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Answer: Answer: edgeR - Design matrix for comparisons of all and subsets of samples
5 months ago James W. MacDonald 66k
1
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1
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541
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Answer: Answer: Batch-resolved visualization after RUVg normalization?
5 months ago James W. MacDonald 66k
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2
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619
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Comment: Comment: distanceToNearest
5 months ago James W. MacDonald 66k
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1
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619
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Answer: Answer: distanceToNearest
5 months ago James W. MacDonald 66k
0
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0
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981
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Answer: Answer: ChAMP - obtaining beta values using EPICv2 annotation
5 months ago James W. MacDonald 66k
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1
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619
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Comment: Comment: distanceToNearest
5 months ago James W. MacDonald 66k
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1
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503
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Answer: Answer: Problem with loading ensembl version 105.
6 months ago James W. MacDonald 66k
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570
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Answer: Answer: DESeq2: the model matrix is not full rank issue
6 months ago James W. MacDonald 66k
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0
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497
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Comment: Comment: Use of data packages in containers
6 months ago James W. MacDonald 66k
0
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1
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390
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Comment: Comment: Statistical test
6 months ago James W. MacDonald 66k
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671
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Answer: Answer: DESeq2 collinearity, adjusting for covariates, and the ground truth
6 months ago James W. MacDonald 66k
0
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0
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616
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Comment: Comment: Unexpected results for a differential expression analysis between males and fema
6 months ago James W. MacDonald 66k
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1
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497
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Answer: Answer: Use of data packages in containers
6 months ago James W. MacDonald 66k
0
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0
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616
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Comment: Comment: Unexpected results for a differential expression analysis between males and fema
6 months ago James W. MacDonald 66k
0
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2
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616
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Answer: Answer: Unexpected results for a differential expression analysis between males and fema
6 months ago James W. MacDonald 66k
0
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1
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2.8k
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Comment: Comment: How to remove X & Y chromosome genes from RNAseq data
6 months ago James W. MacDonald 66k
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1
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998
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Comment: Comment: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
6 months ago James W. MacDonald 66k
2
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0
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523
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Answer: Answer: Txdb object for UCSC hs1 (T2T-CHM13)
6 months ago James W. MacDonald 66k
1
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1
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1.0k
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Answer: Answer: Reduce single cell experiment size to use as reference for annotation with Singl
6 months ago James W. MacDonald 66k
0
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0
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388
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Answer: Answer: Running DESeq on normalized data
6 months ago James W. MacDonald 66k
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1
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430
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Answer: Answer: StringDB: Cannot use payload mechanism to colour nodes
6 months ago James W. MacDonald 66k
0
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1
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609
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Answer: Answer: EnhancedVolcano with labels based on log2 Fold Change
6 months ago James W. MacDonald 66k
0
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1
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498
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Answer: Answer: Linear Model Fitting and Colinearity
6 months ago James W. MacDonald 66k
2
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1
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1.5k
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Answer: Answer: Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DE
6 months ago James W. MacDonald 66k
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0
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389
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Answer: Answer: Can't download Bioconductor
6 months ago James W. MacDonald 66k
3
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562
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Answer: Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)
6 months ago James W. MacDonald 66k
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1
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2.3k
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Comment: Comment: enrichGOgradient color change
6 months ago James W. MacDonald 66k
0
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1
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519
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Comment: Comment: rDGIdb package inconsistency with web interface
6 months ago James W. MacDonald 66k
0
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0
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440
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Answer: Answer: Interaction terms in DESeq2
6 months ago James W. MacDonald 66k
0
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1
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519
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Comment: Comment: rDGIdb package inconsistency with web interface
6 months ago James W. MacDonald 66k
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0
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1.2k
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Answer: Answer: WGCNA documentation not available
6 months ago James W. MacDonald 66k
0
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0
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875
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Answer: Answer: biomaRt_getBM_Failed to collect lazy table
6 months ago James W. MacDonald 66k
0
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1
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519
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Answer: Answer: rDGIdb package inconsistency with web interface
6 months ago James W. MacDonald 66k
0
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0
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444
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Comment: Comment: How to read fcs3.2 files
6 months ago James W. MacDonald 66k
2
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0
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697
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Answer: Answer: Filter genes by expression for voomLmFit
6 months ago James W. MacDonald 66k
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1
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1.9k
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Comment: Comment: How to get DMR for Infinium methylation EPIC v2
6 months ago James W. MacDonald 66k
0
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0
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491
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Answer: Answer: GENESIS: Can not use GdsGenotypeReader to read a gds file
6 months ago James W. MacDonald 66k
0
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1
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347
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Answer: Answer: Java error while running HiCDC overview code
6 months ago James W. MacDonald 66k
1
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1
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1.1k
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Comment: Comment: Ensembl down???
6 months ago James W. MacDonald 66k
0
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0
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433
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Answer: Answer: NCBI protein conversion to CDNA and NCBI gene (in R)
6 months ago James W. MacDonald 66k
0
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1
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853
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Comment: Comment: GOslim missing GO term
7 months ago James W. MacDonald 66k
0
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1
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853
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Comment: Comment: GOslim missing GO term
7 months ago James W. MacDonald 66k
0
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1
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853
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Comment: Comment: GOslim missing GO term
7 months ago James W. MacDonald 66k
0
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1
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853
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Answer: Answer: GOslim missing GO term
7 months ago James W. MacDonald 66k
0
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1
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2.3k
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Comment: Comment: DESeq2 - groups with biological replicates from the same patient
7 months ago James W. MacDonald 66k
1
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0
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578
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Answer: Answer: EdgeR: Exact test and glmQLFTest produce very different results
7 months ago James W. MacDonald 66k
4
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1
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1.0k
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Answer: Answer: limma::voom vs edgeR::voomLmFit - when to use?
7 months ago James W. MacDonald 66k
1
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1
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567
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Comment: Comment: NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
7 months ago James W. MacDonald 66k
8,454 results • Page 7 of 170
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