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Answer: Answer: limma Intercept vs No-intercept models completely changing DMR results?
2 days ago James W. MacDonald 65k
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155
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Answer: Answer: Too many significant genes when integrating gtex and tcga
2 days ago James W. MacDonald 65k
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191
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Comment: Comment: Once again a "Model matrix not full rank"
2 days ago James W. MacDonald 65k
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191
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Comment: Comment: Once again a "Model matrix not full rank"
3 days ago James W. MacDonald 65k
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191
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Answer: Answer: Once again a "Model matrix not full rank"
3 days ago James W. MacDonald 65k
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2.8k
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Comment: Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
3 days ago James W. MacDonald 65k
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94
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Answer: Answer: DESeq2 v1.35.0
3 days ago James W. MacDonald 65k
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150
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Comment: Comment: Store output of matchPWM()
4 days ago James W. MacDonald 65k
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150
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Answer: Answer: Store output of matchPWM()
4 days ago James W. MacDonald 65k
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2
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220
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Answer: Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
4 days ago James W. MacDonald 65k
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223
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Answer: Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
5 days ago James W. MacDonald 65k
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200
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Comment: Comment: Help with error using camera() in limma
5 days ago James W. MacDonald 65k
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200
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Answer: Answer: Help with error using camera() in limma
5 days ago James W. MacDonald 65k
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236
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Comment: Comment: Assist me in determining whether the analysis process using the limma package ha
5 days ago James W. MacDonald 65k
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1
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236
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Answer: Answer: Assist me in determining whether the analysis process using the limma package ha
6 days ago James W. MacDonald 65k
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245
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Comment: Comment: Minfi - estimatecellscount
6 days ago James W. MacDonald 65k
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1
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325
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Comment: Comment: Math expression in shapeCustom legend in EnhancedVolcano
10 days ago James W. MacDonald 65k
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1
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325
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Comment: Comment: Math expression in shapeCustom legend in EnhancedVolcano
10 days ago James W. MacDonald 65k
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325
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Comment: Comment: Math expression in shapeCustom legend in EnhancedVolcano
10 days ago James W. MacDonald 65k
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1
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325
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Comment: Comment: Math expression in shapeCustom legend in EnhancedVolcano
10 days ago James W. MacDonald 65k
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0
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388
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Comment: Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
10 days ago James W. MacDonald 65k
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1
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325
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Answer: Answer: Math expression in shapeCustom legend in EnhancedVolcano
10 days ago James W. MacDonald 65k
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1
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388
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Comment: Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
10 days ago James W. MacDonald 65k
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239
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Comment: Comment: How to retrieve gene ontology GO class from gene list?
10 days ago James W. MacDonald 65k
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2
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388
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Comment: Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
10 days ago James W. MacDonald 65k
2
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1
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388
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Answer: Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
10 days ago James W. MacDonald 65k
1
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1
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325
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Comment: Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
10 days ago James W. MacDonald 65k
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261
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Comment: Comment: get BM error
11 days ago James W. MacDonald 65k
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300
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Comment: Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
11 days ago James W. MacDonald 65k
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261
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Answer: Answer: get BM error
11 days ago James W. MacDonald 65k
2
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1
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239
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Answer: Answer: How to retrieve gene ontology GO class from gene list?
11 days ago James W. MacDonald 65k
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1
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239
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Comment: Comment: How to retrieve gene ontology GO class?
12 days ago James W. MacDonald 65k
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1
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300
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Comment: Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
12 days ago James W. MacDonald 65k
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0
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234
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Comment: Comment: Error EPICv2 ChAMP
13 days ago James W. MacDonald 65k
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234
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Answer: Answer: Error EPICv2 ChAMP
13 days ago James W. MacDonald 65k
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126
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Answer: Answer: FDR via q-value
13 days ago James W. MacDonald 65k
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1
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300
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Answer: Answer: Error for AnnotationForge makeOrgPackageFromNCBI function
13 days ago James W. MacDonald 65k
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154
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Comment: Comment: Error retrieving ensembl gene id using biomaRt...
16 days ago James W. MacDonald 65k
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154
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Answer: Answer: Error retrieving ensembl gene id using biomaRt...
16 days ago James W. MacDonald 65k
1
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190
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Answer: Answer: OrgDb for maize
16 days ago James W. MacDonald 65k
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0
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139
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Answer: Answer: SNP locus package for mouse?
19 days ago James W. MacDonald 65k
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0
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194
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Answer: Answer: flowStats Search Error
19 days ago James W. MacDonald 65k
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0
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119
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Comment: Comment: what is the sampleFiles
19 days ago James W. MacDonald 65k
1
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1
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946
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
25 days ago James W. MacDonald 65k
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1
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946
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
25 days ago James W. MacDonald 65k
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2
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946
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Answer: Answer: Convert Seurat Object to Summarised Experiment or ExpressionSet
25 days ago James W. MacDonald 65k
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0
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493
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Comment: Comment: GSVA on separate healthy and disease datasets
25 days ago James W. MacDonald 65k
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1
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426
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Comment: Comment: Not fully paired differential gene expression analysis
25 days ago James W. MacDonald 65k
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350
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Answer: Answer: Why is my gene not significantly differentially expressed?
25 days ago James W. MacDonald 65k
2
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1
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426
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Answer: Answer: Not fully paired differential gene expression analysis
26 days ago James W. MacDonald 65k
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